Locus 297

Sequence ID 2R_DroMel_CAF1
Location 1,744,879 – 1,744,970
Length 91
Max. P 0.556087
window615

overview

Window 5

Location 1,744,879 – 1,744,970
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 77.45
Mean single sequence MFE -30.05
Consensus MFE -18.41
Energy contribution -18.80
Covariance contribution 0.39
Combinations/Pair 1.30
Mean z-score -1.38
Structure conservation index 0.61
SVM decision value 0.04
SVM RNA-class probability 0.556087
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1744879 91 - 20766785
AGUUACAUCAGAAACAUA--AAAUUGAGGGAUAGAGCUCUUACCCCCGAUGAGGGGCAGCUGUUUGGGCGGCUGCUCUUCCACGGGACUGAGU
.......((((.......--....((((((......))))))..((((..(((((((((((((....)))))))))))))..)))).)))).. ( -37.40)
>DroSec_CAF1 11817 91 - 1
AGUUACUUCAGAAACAUU--AGAUUGAGGGAUAGAGCUCUUACCCUCGAUGAGGGGCAGCUGUUUUGGCGGCAGCUCUUCCACGGGACUAAGG
(((..(............--..((((((((..((....))..))))))))(((((((.(((((....))))).)))))))...)..))).... ( -30.30)
>DroSim_CAF1 12044 91 - 1
AGUUACUUCAGAAACAUU--AGAUUGAGGGAUAGAGCUCUUACCCUCGAUGAGGGGAAGCUGUUUUGGCGGCAGCUCUUCCACGGGACUAAGG
(((..(............--..((((((((..((....))..))))))))((((((..(((((....)))))..))))))...)..))).... ( -27.60)
>DroEre_CAF1 12523 91 - 1
CCUUACAUCUGGAUCAUU--AGAUUGUGGAACAGAGCUCUUACCAUCGAUGAGGGGCAGCUGCUUGGGCGGCUGCUCUUCCACGGGACUGAGC
.......((((..((((.--.....))))..))))((((...((..((..(((((((((((((....)))))))))))))..))))...)))) ( -38.00)
>DroYak_CAF1 15486 91 - 1
CCUUACAUCUGGAUCAUU--AGACUUUGGAAUAAAACACUUACCAUCGAUGAGGGGCAGCUGUUUGGGUGGCUGCUCUUCCACAGGACUGAGC
.((((..((((.......--...(..(((.............)))..)..((((((((((..(....)..))))))))))..))))..)))). ( -23.82)
>DroAna_CAF1 10057 91 - 1
--GGGCUGUAGAAAUGUGUGUAAUUCAAGGGGGAAUCACUUACCUUCGAUGAGAGGUAACGGCUUGGGCGGCACCUCCUCCACGGGGCUGAGC
--(((((((........(((..((((......))))))).((((((......)))))))))))))...((((.(((.......)))))))... ( -23.20)
>consensus
AGUUACAUCAGAAACAUU__AGAUUGAGGGAUAGAGCUCUUACCCUCGAUGAGGGGCAGCUGUUUGGGCGGCAGCUCUUCCACGGGACUGAGC
......................................((((..((((..(((((((.(((((....))))).)))))))..))))..)))). (-18.41 = -18.80 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:50 2006