Locus 2968

Sequence ID 2R_DroMel_CAF1
Location 10,232,900 – 10,233,000
Length 100
Max. P 0.984905
window4909

overview

Window 9

Location 10,232,900 – 10,233,000
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 75.39
Mean single sequence MFE -29.22
Consensus MFE -12.87
Energy contribution -12.96
Covariance contribution 0.08
Combinations/Pair 1.23
Mean z-score -2.72
Structure conservation index 0.44
SVM decision value 1.99
SVM RNA-class probability 0.984905
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10232900 100 + 20766785
CCUUUUCCAACUUUUUAUGCCCUGAACUGCCCACUUGGCCCACAGCCACCCA-CUUUGGGGCAACUUGCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU
.................(((((..((.((......((((.....))))..))-.))..)))))((.((((..((((((((.....)))))))))).)).)) ( -31.10)
>DroSec_CAF1 61883 99 + 1
CCUGCUCCAACUUUUUAUGGCCUGAAACGCCCACUUGGC-CACCGCCACCCA-CUUUGGGGCAACUUUCUGACUGCGCUUAAUUAAAGCGCAGGGUCACGU
((((((((((........(((.......)))....((((-....))))....-..)))))))).........((((((((.....))))))))))...... ( -31.80)
>DroSim_CAF1 62213 81 + 1
CCUUCUCCAACUUUUUAUGCCCUGAACCGCC-------------------CA-CUUUGGGGCAACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU
......((.........(((((..((.....-------------------..-.))..))))).........((((((((.....))))))))))...... ( -25.90)
>DroEre_CAF1 66825 99 + 1
CCUUCUCCAACUUUUUAUGGCCUGAACCGCCCACUCGGC-CAGCGCCGCCCA-CUUUGUGGCGACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU
.................(((((............((((.-.((((((((...-....)))))).))..))))((((((((.....)))))))))))))... ( -35.30)
>DroYak_CAF1 62199 98 + 1
CCCUUUCUAACUU-UUAUGGCCAGAACCGCCCACUUGGC-CACCGCCUCCUC-CUUUGGGGCGACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU
.............-....(((.......))).((.((((-(..((((.((..-....)))))).........((((((((.....))))))))))))).)) ( -32.90)
>DroAna_CAF1 65247 83 + 1
---ACUUCAAGAUUUUAAACCAAGAAAUCCU-------------GCCUUUCAGUUGUCGGGCAUCCU--UGGCUGAGCUUAAUUAAAACGCAGGGUCACGU
---....................(..(((((-------------((.(((.(((((((((.((....--)).))))...))))).))).)))))))..).. ( -18.30)
>consensus
CCUUCUCCAACUUUUUAUGCCCUGAACCGCCCACUUGGC_CACCGCCACCCA_CUUUGGGGCAACUUUCCGACUGCGCUUAAUUAAAGCGCAGGGUCACGU
......((....................(((............................)))..........((((((((.....))))))))))...... (-12.87 = -12.96 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:14 2006