| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,206,999 – 10,207,102 |
| Length | 103 |
| Max. P | 0.692111 |
| Location | 10,206,999 – 10,207,102 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -26.99 |
| Consensus MFE | -18.49 |
| Energy contribution | -17.63 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10206999 103 - 20766785 ACAGACGUGAGACU----------CCCGCUUCUGCAGCCAUUUUGUAAAUUUCAUGUGCAUUAUAUUUGCAAAU--UUGCGUUGUUUAUUUAUGCGCGGCAAUGCGCAGAGCACA-- .....(....)...----------...((((..(((((((.(((((((((...((....))...))))))))).--.)).))))).......((((((....))))))))))...-- ( -24.60) >DroPse_CAF1 17952 107 - 1 AC---CGCGAAAAU-------GAACCAGAUACUGUAGCCAUUUUGCACAUUUCAUGUGCAUUAUAUUUGCAAAUCGUUGUGUUGUUUAUUUAUGCGCGGCAGUGCACAGAGCACACA .(---((((.((((-------((((..((((((((((..((..(((((((...)))))))..))..))))).......)))))))))))))...)))))..((((.....))))... ( -32.21) >DroSec_CAF1 36552 103 - 1 ACAGAUGUGAGACU----------CCCGCUUCUGCAGCCAUUUUGUAAAUUUCAUGUGCAUUAUAUUUGCAAAU--UUGCGUUGUUUAUUUAUGCGCGGCAAUGCGCAGAGCACA-- .((((.(((.....----------..))).))))((((((.(((((((((...((....))...))))))))).--.)).))))........((((((....)))))).......-- ( -23.70) >DroWil_CAF1 39510 113 - 1 UUCCCUGUGUAUUCCCUUUUGGUUUCUGUUGCUGCAGCCAUUUUGUAAAUUUCAUGUGCAUUAUAUUUGCAAAU--UUGUGUUGUUUAUUUAUGCGCGGCAAUGCGCAGGGUACA-- ..((((((((....((....)).....((((((((.((.((...((((((..(((.((((.......))))...--..)))..))))))..))))))))))))))))))))....-- ( -36.10) >DroAna_CAF1 41098 103 - 1 UCCCACGAAAAUCC----------CCUGCUUCUGCAGCCAUUUUGUAAAUUUCAUGUGCAUUAUAUUUGCAAAU--UUGCGUUGUUUAUUUAUGCGCGGCAAUGCGCAGAGUACA-- ....((((((....----------.((((....))))...))))))....(((.((((((((......(((...--.)))(((((.((....)).))))))))))))))))....-- ( -23.00) >DroPer_CAF1 17798 106 - 1 AC---CGCGAAAAU-------GC-CCAGAUACUGUAGCCAUUUUGCAAAUUUCAUGUGCAUUAUAUUUGCAAAUCGUUGUGUUGUUUAUUUAUGCGCGGCAAUGCACAGAGCACACA .(---((((.((((-------(.-.((.((((...(((...(((((((((...((....))...)))))))))..)))))))))..)))))...)))))...(((.....))).... ( -22.30) >consensus AC__ACGUGAAACU__________CCAGCUUCUGCAGCCAUUUUGUAAAUUUCAUGUGCAUUAUAUUUGCAAAU__UUGCGUUGUUUAUUUAUGCGCGGCAAUGCGCAGAGCACA__ ...........................(((.((((.(((..(((((((((...((....))...))))))))).....((((...........))))))).....)))))))..... (-18.49 = -17.63 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:01 2006