Locus 296

Sequence ID 2R_DroMel_CAF1
Location 1,742,725 – 1,742,826
Length 101
Max. P 0.749517
window614

overview

Window 4

Location 1,742,725 – 1,742,826
Length 101
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 88.75
Mean single sequence MFE -47.58
Consensus MFE -39.10
Energy contribution -39.97
Covariance contribution 0.86
Combinations/Pair 1.09
Mean z-score -2.18
Structure conservation index 0.82
SVM decision value 0.47
SVM RNA-class probability 0.749517
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1742725 101 - 20766785
GACCCCUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUAGUGGUGCUGCCGGUGGUGGAGCA----------
........((((((((((((((.(((.((((((.(((....)))))))))(((((...(((.....)))...))))).....)))))))))))))))))..---------- ( -44.10)
>DroSec_CAF1 9547 101 - 1
AACCGCUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA----------
....(((((...((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))).---------- ( -46.70)
>DroSim_CAF1 9772 101 - 1
GACCGCUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA----------
....(((((...((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))).---------- ( -46.70)
>DroEre_CAF1 10936 101 - 1
GACUACUGCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGAAGCA----------
.......(((((((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))).---------- ( -49.80)
>DroYak_CAF1 12442 101 - 1
GACCACUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCGAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA----------
........((((((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))..---------- ( -44.60)
>DroAna_CAF1 7876 111 - 1
CACGCCGACCUCGUCGCCCGCAUGCGAGGUGUUGUUGGAGUCGAACCGCCUGCGCUUGCGGUUCUUGCGAGUUCGGUGGUGGUGCUGCCGGUGGUGCAGCGGCAGCUGGAG
..((((((.(((((...(((((.((((((((...(((....)))..))))).))).))))).....))))).)))))).....(((((((.((...)).)))))))..... ( -53.60)
>consensus
GACCACUCCUUCAUCGCCGGCAUGCGAGGUGUUGUUGGAGUCAAAGCGCCGUCGCUUUCGGUUCUUUCGCGUGCGAUGGUGGUGCUGCCGGUGGUGGAGCA__________
........((((((((((((((.(((........(((....)))..(((((((((...(((.....)))...))))))))).)))))))))))))))))............ (-39.10 = -39.97 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:49 2006