Locus 2956

Sequence ID 2R_DroMel_CAF1
Location 10,200,073 – 10,200,174
Length 101
Max. P 0.819411
window4884

overview

Window 4

Location 10,200,073 – 10,200,174
Length 101
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -23.40
Consensus MFE -15.39
Energy contribution -15.43
Covariance contribution 0.04
Combinations/Pair 1.29
Mean z-score -1.87
Structure conservation index 0.66
SVM decision value 0.68
SVM RNA-class probability 0.819411
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10200073 101 - 20766785
CAAAGAGAUAAAUAUAAGACGGAAGUUUGCUGGUGAAAAAAAA----------AAACUUUAUACAGGUGCUAAUCAAAGA------CGCGGGGCGCUUUCAUGAUAAAGUUUUUAUU
................((((....)))).............((----------(((((((((..(((((((...(.....------.)...))))))).....)))))))))))... ( -19.40)
>DroSec_CAF1 28246 101 - 1
CAAAGAGAUAAAUAUAGGACGGAAGUUUGCUGGUGGAAAAAAA----------AAACUUUAUCCAGGUGCUAAUCAAAGA------GACGGGGCGCCUUUAUGAUGAAGUUUUUAUU
................((((....)))).............((----------((((((((((.(((((((..((.....------))...)))))))....))))))))))))... ( -25.70)
>DroSim_CAF1 28502 100 - 1
CAAAGAGAUAAAUAUAGGACGGAAGUUUUCCGGUG-AAAAAAA----------AAACUUUAUCCAGGUGCUAAUCAAAGA------GACGGGGCGCUUUUAUGAUGAAGUUUUUAUU
...................((((.....))))...-.....((----------((((((((((.(((((((..((.....------))...)))))))....))))))))))))... ( -23.50)
>DroEre_CAF1 32797 106 - 1
AAAAGGAAUAAAUAUAGGGCGGAAGUUUGCGGGCGAA----AGAGAGGAGAGCAAACUUUAUCCAGGUGCUAAUCAAAGA-------ACUGAGUGCUUUCAUGAUUAAGUUUUUAAU
.(((((..(((.((((((((((((((((((...(...----.)........)))))))))...(((...((......)).-------.)))..)))))).))).)))..)))))... ( -19.70)
>DroYak_CAF1 29034 117 - 1
AAAAGCGAUAAAUACAGGACGGAAGUUUGCUGGCGUAAAAAAAGGAAGAGAGCAAACUUUAUCCAGGUGCUAAUCAAAGAAAAAGAGACGGAGCGCUGCCCUGUUUAAGUUUUUAUU
((((((.......(((((..(((((((((((..(.............)..))))))))...))).((((((..((...........))...))))))..)))))....))))))... ( -28.72)
>consensus
CAAAGAGAUAAAUAUAGGACGGAAGUUUGCUGGUGAAAAAAAA__________AAACUUUAUCCAGGUGCUAAUCAAAGA______GACGGGGCGCUUUCAUGAUGAAGUUUUUAUU
................((((....)))).........................((((((((((.(((((((....................)))))))....))))))))))..... (-15.39 = -15.43 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:52 2006