Locus 2954

Sequence ID 2R_DroMel_CAF1
Location 10,191,284 – 10,191,388
Length 104
Max. P 0.817299
window4880

overview

Window 0

Location 10,191,284 – 10,191,388
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.03
Mean single sequence MFE -31.43
Consensus MFE -17.88
Energy contribution -19.00
Covariance contribution 1.12
Combinations/Pair 1.35
Mean z-score -1.93
Structure conservation index 0.57
SVM decision value 0.67
SVM RNA-class probability 0.817299
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10191284 104 + 20766785
GGUCGCACUGAAGGUUCAACUUCUUCCGUGACAUCUAAACGUUCCACUACCGAUUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUUGUAUAUCCACUAUUUC
.(((((...((((......))))....)))))........((((((((((.((((..........)))).)))))))))---).(((.........)))........ ( -28.30)
>DroSec_CAF1 19338 104 + 1
GGUCGCAUUGGAGGUUCAACUUCUUCCGUGACAUCUAUACGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUGGUGUAUCCCCUAUUUC
.(((((...(((((.....)))))...)))))........((((((((((.((((..........)))).)))))))))---).(((((....)).)))........ ( -31.80)
>DroSim_CAF1 19572 104 + 1
GGUCGCAUUGGAGGUUCAACUUCUUCCGUGACAUCUAUACGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUGGUGUAUCCACUAUUUC
.(((((...(((((.....)))))...)))))........((((((((((.((((..........)))).)))))))))---)..(((.(((((....))))).))) ( -33.40)
>DroEre_CAF1 24170 104 + 1
GGUCGCAUUGGUGGUUCAACCUCCUCAGUGACUUCUAUGCGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG---CCAGAGCUGGUGAGUCCACUAUUUC
((((((...((.((.....)).))...))))))....((.((((((((((.((((..........)))).)))))))))---)))(((.(((((....))))).))) ( -35.60)
>DroYak_CAF1 20008 104 + 1
GGUCGCAUUGGAGGUUCAACUUCUUCAGUGACUUCUAUGCGUUCCACUACUGACUCCACAAAUCCAGUUUGUGGUGGAG---CCGGAGCUUGAGAAUCCACUAUUUC
.(((((...(((((.....)))))...)))))((((..((((((((((((.((((..........)))).)))))))))---)....))...))))........... ( -31.90)
>DroAna_CAF1 19280 98 + 1
G---------GAGCCUCAACUUCUGUGGUCUCUUCAAUAUUCUCAACGAGGGUUUCCACUAAACCGGGUUGGCUUAUAGAAAUAGUGGCUUCAGGUAUCACUACCUC
(---------(((((.(...((((((((((..(((......(((...)))(((((.....))))))))..))).)))))))...).))))))(((((....))))). ( -27.60)
>consensus
GGUCGCAUUGGAGGUUCAACUUCUUCCGUGACAUCUAUACGUUCCACUACCGACUCCACAAAUCCAGUUUGUGGUGGAG___CCGGAGCUGGUGUAUCCACUAUUUC
.(((((...(((((.....)))))...))))).(((.....(((((((((.((((..........)))).))))))))).....))).................... (-17.88 = -19.00 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:48 2006