| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,182,604 – 10,182,701 |
| Length | 97 |
| Max. P | 0.936418 |
| Location | 10,182,604 – 10,182,701 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 88.49 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -22.94 |
| Energy contribution | -23.38 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10182604 97 - 20766785 GAAGUAUUGGGGUCGACUGUUUCCCCAGUUGAUUAAAUGGAAAGUGAUGCCCGGGCUCUUGAAUUGGAGGCAGUCGGUCCAUGCUUUAUGAAACAA-A (((((((..((..((((((((((((((..........))).....((.((....)))).......)))))))))))..))))))))).........-. ( -33.90) >DroSec_CAF1 10707 98 - 1 GCAGUAUUGGGGUCGACUGUUUCCCCAGUUGAUUAAAUGGAAAGUGAUGCCCGGGCUCUUGAAUUGGAGGUAGUCGGGCAAUGCUUUAUGAAACAAAA ....((((..(((((((((......))))))))).)))).((((((.(((((((.((((......))))....))))))).))))))........... ( -29.60) >DroSim_CAF1 10838 97 - 1 GAAGUAUUGGGGUCGACUGUUUCCCCAGUUGAUUAAAUGGAAAGUGAUGCCUGGGCUCUUGAAUUGGAGCCAGUCGGGCAAUGCUUUAUGAAACAA-A ....((((..(((((((((......))))))))).)))).((((((.((((((((((((......))))))...)))))).)))))).........-. ( -33.40) >DroEre_CAF1 15487 96 - 1 GAAGCAUUGGGGUCGACUGUUUCCCCAGUUGAUUAAAUGGAAAGUGAUGC-UGAGCUAUUGAAUUGCAGAAAGUCGGGCAAUGCUUUAUGAAACCA-G (((((((((.(((((((((......)))))))))..........((((.(-((..(....).....)))...))))..))))))))).........-. ( -24.20) >DroYak_CAF1 11082 88 - 1 GAAGUAUUGGGGUCGACUGUUUCCCCAGUUGAUUAAAUGGAAAGUGAUGU-UGAGCUAUUAAAUUGAAGGAAGUCGGGCAAUGCUUUAU--------- (((((((((...((((((...(((....(..(((.(((((...(......-)...))))).)))..).))))))))).)))))))))..--------- ( -21.40) >consensus GAAGUAUUGGGGUCGACUGUUUCCCCAGUUGAUUAAAUGGAAAGUGAUGCCUGGGCUCUUGAAUUGGAGGAAGUCGGGCAAUGCUUUAUGAAACAA_A ....((((..(((((((((......))))))))).)))).((((((.(((((((.((((......))))....))))))).))))))........... (-22.94 = -23.38 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:38 2006