Locus 2939

Sequence ID 2R_DroMel_CAF1
Location 10,166,225 – 10,166,345
Length 120
Max. P 0.984510
window4848

overview

Window 8

Location 10,166,225 – 10,166,345
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.58
Mean single sequence MFE -20.57
Consensus MFE -16.96
Energy contribution -16.96
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.21
Structure conservation index 0.82
SVM decision value 1.98
SVM RNA-class probability 0.984510
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10166225 120 + 20766785
CCCCUCAUCCCAUUUCCAUAGACAUUGCCAUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU
................((((((.................................)))))).............(((....)))(((((((((..............))))))))).... ( -18.75)
>DroSec_CAF1 5970 120 + 1
CCCCUCAUCCUAUUUCCAUUGCCAUUGCCUUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU
.............(((...((((((((...............................................(((....)))(((((......)))))....))))))))...))).. ( -19.80)
>DroSim_CAF1 5910 120 + 1
CCCCUCAUCCCAUUUCCAUUGCCAUUGCCUUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU
.............(((...((((((((...............................................(((....)))(((((......)))))....))))))))...))).. ( -19.80)
>DroEre_CAF1 6034 120 + 1
CAACUCAUCCCAUCUCCAUCUCCAUCUCCAUAGCCAUUCCCAUUCCCAUGCCCAUUCUAUGUUCCCUUCACUUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU
..........((((((((..........(((((.......(((....)))......)))))............))).)))))..(((((((((..............))))))))).... ( -21.81)
>DroYak_CAF1 5832 120 + 1
CACCUCAUCCCAUCUCCAUCUCCAUUCCUAUAGCCAUUCCCAUUCGUAUGCCCAUCCUAGGUUCCCUUCACAUUGGCAGAGGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU
..((((.................((....)).((((.............(((.......)))...........)))).))))..(((((((((..............))))))))).... ( -22.69)
>consensus
CCCCUCAUCCCAUUUCCAUCGCCAUUGCCAUUCCCAUUCCUAUUUCCAUUCCCAUUCUAUGUUCCCUUCACAUUGGCAGAUGCCCGAGUGCCAAGACUCGAUUUUAAUGGCACUUGAACU
............................................................((((..........(((....))).((((((((..............)))))))))))). (-16.96 = -16.96 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:17 2006