Locus 2938

Sequence ID 2R_DroMel_CAF1
Location 10,165,773 – 10,165,893
Length 120
Max. P 0.918872
window4847

overview

Window 7

Location 10,165,773 – 10,165,893
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.83
Mean single sequence MFE -33.78
Consensus MFE -30.28
Energy contribution -30.20
Covariance contribution -0.08
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.90
SVM decision value 1.12
SVM RNA-class probability 0.918872
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10165773 120 + 20766785
GGCAUACAACGAAAUGGAAUGUGUCUGGUGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG
(((...((......))....(((((((((((((..((((...((((....))))))))..))))))(((((..........)))))..................))))))).....))). ( -33.50)
>DroSec_CAF1 5511 120 + 1
GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGGCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG
(((.....(((..((((((((((.((.......))))).(.(((((....))))).)..)))))))..))).........((((((..(((.((((....))))..))))))))).))). ( -34.20)
>DroSim_CAF1 5443 120 + 1
GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGGCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG
(((.....(((..((((((((((.((.......))))).(.(((((....))))).)..)))))))..))).........((((((..(((.((((....))))..))))))))).))). ( -34.20)
>DroEre_CAF1 5581 120 + 1
GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCUG
.......(((..((((....(((((((.(((((..((((...((((....))))))))..)))).((((((..........))))))...............).))))))))))).))). ( -33.10)
>DroYak_CAF1 5378 120 + 1
GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG
(((....((((.........(((((((.(((((..((((...((((....))))))))..)))).((((((..........))))))...............).))))))))))).))). ( -33.90)
>consensus
GGCAUAAAGCGAAAUGGAAUGCGUCUGGGGGAAAGUGCAGGAGUCGGAUUUGAUUGCAAGUUCCAUGGCGUAGAAAGUAAAAUGCCAAGUCACAUAUUAAUAUGCAGACGCCGUUAGCCG
(((....((((.........(((((((..((((..((((...((((....))))))))..)))).((((((..........)))))).................))))))))))).))). (-30.28 = -30.20 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:16 2006