Locus 293

Sequence ID 2R_DroMel_CAF1
Location 1,722,758 – 1,722,870
Length 112
Max. P 0.789788
window608

overview

Window 8

Location 1,722,758 – 1,722,870
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 95.24
Mean single sequence MFE -22.42
Consensus MFE -19.10
Energy contribution -19.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.46
Structure conservation index 0.85
SVM decision value 0.58
SVM RNA-class probability 0.789788
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1722758 112 - 20766785
CUAACCCACAUAUCCGACCCGUUCGCCCCACCAUUAUUAUCCCUGGAACCAACUGCCCACCCCCACCACCGCUUUUGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUGCUCU
....................((((((((((((.......((....))..(((..((..............))..)))............)).)))))))))).......... ( -21.44)
>DroSec_CAF1 8026 112 - 1
CUAACCCACUUAUCCGACCCGUUGGCCCCACCAUUAUUAUCCCUGGAACCAACUCCCCACCCCCACCACCGCCUUCGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUUCUCU
....................(((((..(((.............)))..)))))....((((((.(((..((....))..(((....)))))).))))))............. ( -24.02)
>DroSim_CAF1 8026 112 - 1
CUAACCCACUUAUCCGUCCCGUUCGCCCCACCAUUAUUAUCCCUGGAACCAACUCCCCACCUCCACCACCGCUUUCGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUUCUCU
....................((((((((((((............(((......))).......................(((....))))).)))))))))).......... ( -21.80)
>consensus
CUAACCCACUUAUCCGACCCGUUCGCCCCACCAUUAUUAUCCCUGGAACCAACUCCCCACCCCCACCACCGCUUUCGACGAAUUCCUUCGGUUGGGGUGAAUAAUAUUCUCU
....................((((((((((((...........(((..........)))....................(((....))))).)))))))))).......... (-19.10 = -19.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:44 2006