Locus 2929

Sequence ID 2R_DroMel_CAF1
Location 10,152,065 – 10,152,175
Length 110
Max. P 0.670170
window4829

overview

Window 9

Location 10,152,065 – 10,152,175
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 93.36
Mean single sequence MFE -26.44
Consensus MFE -21.20
Energy contribution -21.88
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.80
SVM decision value 0.29
SVM RNA-class probability 0.670170
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10152065 110 - 20766785
AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGUCACCGAAAACGGACAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACAG
.((((((((.(((..(((.(((((..........))))).)))..))).)))))))).(((((........)))))....(((((((((((......))))))))))).. ( -28.00)
>DroSec_CAF1 12556 110 - 1
AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGCCACCGAAAACGGAGAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACGG
...(((((((.((....)).)))))))..((((((....)).........((((..(.(((....))).)..))))))))(((((((((((......))))))))))).. ( -24.20)
>DroSim_CAF1 7485 110 - 1
AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGCCACCGAAAACGGACAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACGG
...........(((((((.(((((((...((((((....)).(((.....))).))))))).))))...))))))).((.(((((((((((......))))))))))))) ( -26.50)
>DroEre_CAF1 12815 108 - 1
AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCACGAACCUAUGUAAUAUUCGAGCCACCGAA-ACGGGCAUUUGG-CCAGUUAAUUAGCUUUAUUUGGGUAAUUAACCG
...........(((((((.(((((((...((((.((((...........)))).)))))))))-))...)))))))-...((((((((.((......)).)))))))).. ( -30.40)
>DroYak_CAF1 7537 109 - 1
AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAAGAACCUAUGCAAUAUUCGAGCCAACGAA-AUGGGCAUUUGGGAGAGUUAAUUAGCUUUAUUUGUGUAAUUAACUG
...........(((((((.((((((...(((((..(((...........)))..)))))))))-))...)))))))...(((((((((((.......)).))))))))). ( -23.10)
>consensus
AGAUUUGAAAAUUAAAUGAGUUUCGGGAUUGGCAGGAACCUAUGAAAUAUUCGAGCCACCGAAAACGGACAUUUGGGCCAGUUAAUUAGCUUUAUUUGGUUAAUUAACGG
...........(((((((.(((((((...((((..(((...........)))..))))))))).))...)))))))....(((((((((((......))))))))))).. (-21.20 = -21.88 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006