Locus 2922

Sequence ID 2R_DroMel_CAF1
Location 10,139,551 – 10,139,671
Length 120
Max. P 0.536967
window4817

overview

Window 7

Location 10,139,551 – 10,139,671
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.29
Mean single sequence MFE -30.00
Consensus MFE -21.20
Energy contribution -21.88
Covariance contribution 0.68
Combinations/Pair 1.21
Mean z-score -1.74
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.536967
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10139551 120 + 20766785
GUACGAAGUGGCAGCACCGUUGUGCUUCACUGCAAAUGCUGCCUGCUGCGAAACAUUCAGUUUGAAUGUUUGGUCGUUACAUUUUGAUAUUUAUUUAUCUGUACACAGAUAUUAACAUAA
...(((((((((((((...((((........)))).))))))).((.((.((((((((.....)))))))).)).))...)))))).........((((((....))))))......... ( -35.30)
>DroSec_CAF1 4849 120 + 1
GUACGAUGUGGCAGCUCCGUUGUGCUCCACUGCAAAAGCUGCCUGCUGUAAAACAUUCAGCUUGAAUGUUUGGUCGUUACUUUUUGAUAUUUAUUUACCUGUACACAAAUAUUAACAUAA
((((((((((((((((...((((........)))).))))))).))....((((((((.....)))))))).)))).)))...(((((((((.(.((....)).).)))))))))..... ( -30.30)
>DroSim_CAF1 4660 120 + 1
GUACGAGGUGGCAGCGCCGUUGUGCUCCACUGCAAAAGCUGCCUGCUGUAAAACAUUCAGCUUGAAUGUUUGGUCGUUACUUUUUGAUAUUUAUUUAUCUGUACACAAAUAUUAACAUAA
(((((.(((((.(((((....)))))))))).)(((((..((..(((...((((((((.....))))))))))).))..))))).((((......)))).))))................ ( -29.90)
>DroEre_CAF1 5335 116 + 1
GAACGAAGUGGCAGCGCCGUUGUGUUCUAUUGCACAAGCAGACCGCUGCGAAACUUUCAGCUUAAAUGUUUGGUCGUUACUUUUUAAUAUU----UAUCUGUACACAAAUAUUAACAUAA
.......(((((((((.(.((((((......))))))...)..))))))........(((..((((((((.(((....)))....))))))----)).)))..))).............. ( -24.90)
>DroYak_CAF1 4623 116 + 1
GUACGAAGUGGCAGCGCCGCAGUGUUCUAUUGCAAAAGCUGCCUGCUGCGAAGCUUUCAGUUUGAAUGUUUGGUCGUUACUUUUUGAUAUU----UAUCUGUACACAAAUAUUAACAUAA
(((((((((((((((...((((((...))))))....)))))).((.((.((((.(((.....))).)))).)).)).)))))..(((...----.))).))))................ ( -29.60)
>consensus
GUACGAAGUGGCAGCGCCGUUGUGCUCCACUGCAAAAGCUGCCUGCUGCGAAACAUUCAGCUUGAAUGUUUGGUCGUUACUUUUUGAUAUUUAUUUAUCUGUACACAAAUAUUAACAUAA
(((((((((((((((((.((..(((......)))...)).)..)))))).((((((((.....))))))))......))))))..((((......)))).))))................ (-21.20 = -21.88 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006