| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,721,600 – 1,721,707 |
| Length | 107 |
| Max. P | 0.799532 |
| Location | 1,721,600 – 1,721,707 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.22 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -26.39 |
| Energy contribution | -26.83 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1721600 107 - 20766785 AAUUAACAAUAUGAACAGCUUCUGAUGGAUUGCACACGCUUGUG-------------GAAAAAAAAAGAUGGAACAGCUGACCGAGAGUUAGCAUGUUAGCAGCUAACAGGGGACGGACC .................(((((((.(((.((((.(((....)))-------------...............((((((((((.....)))))).)))).))))))).)))))).)..... ( -25.00) >DroSec_CAF1 6814 118 - 1 AACCAACACCAUGAACAGCUUCUGUUGGAUUGCACACGCUUGUGACAAUAAAAUGUGGAAAA--AAAUAUGGAACAGCUGACCGAGAGUUAGCAUGUUAGCAGCUAACAGAGGACGGACC ..((..(.....)....(((((((((((.((((.((((.((((....))))..)))).....--........((((((((((.....)))))).)))).)))))))))))))).)))... ( -31.50) >DroSim_CAF1 6832 120 - 1 AACCAACACCAUGAACAGCUUCUGUUGGAUUGCACACGCUUGUGACAAUAAAAUGUGGAAAAAAAAAUAUGGAACAGCUGACCGAGAGUUAGCAUUUUAGCAGCUAACAGAGGACGGACC ..((..(.....)....(((((((((((.((((.((((.((((....))))..))))...................((((((.....))))))......)))))))))))))).)))... ( -29.30) >consensus AACCAACACCAUGAACAGCUUCUGUUGGAUUGCACACGCUUGUGACAAUAAAAUGUGGAAAAAAAAAUAUGGAACAGCUGACCGAGAGUUAGCAUGUUAGCAGCUAACAGAGGACGGACC .................(((((((((((.((((.(((....)))............................((((((((((.....)))))).)))).)))))))))))))).)..... (-26.39 = -26.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:43 2006