Locus 2919

Sequence ID 2R_DroMel_CAF1
Location 10,134,716 – 10,134,817
Length 101
Max. P 0.785375
window4813

overview

Window 3

Location 10,134,716 – 10,134,817
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.64
Mean single sequence MFE -29.27
Consensus MFE -23.16
Energy contribution -22.42
Covariance contribution -0.74
Combinations/Pair 1.45
Mean z-score -1.72
Structure conservation index 0.79
SVM decision value 0.57
SVM RNA-class probability 0.785375
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10134716 101 + 20766785
UUCGUUCAUAAAACACUGUUCCCUGAAGUAUUUUGAGCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAAAAGGCAGCCUUU--GGUAUAGU
..............(((((.(((((.....(((((.((((((((((.(((((........))))))))))..))))).)))))..))).....--)).))))) ( -27.80)
>DroSec_CAF1 22 101 + 1
UUCGUUCAUAAAGCACUGUUCCUUGAAGUACUUUGUGCGGUACAAGCAUCGCUUUUCUCUGUGAUUUCGUUUGCCGCACAAAAGGCAGCCUUU--GGUAUAGU
..............(((((.((..(..((..(((((((((..((((((((((........)))))...))))))))))))))..))..)....--)).))))) ( -27.60)
>DroSim_CAF1 22 101 + 1
UUCGUUCAUAAAGCACUGUUCCCUGAAGUACUUUGUCCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAGAAGGCAGCCUUU--GGUAUAGU
..............(((((.((..(..((..(((((.(((((((((.(((((........))))))))))..)))).)))))..))..)....--)).))))) ( -24.60)
>DroEre_CAF1 23 101 + 1
UUCAUUCAUAAAGCAAAGUUCCCUGAAGUACUUUGUGCGGUACGCGCAUCGCUUUUCCCUGUGAUUGCGUUUGCCGCACAAAAGGCAGCCUUU--GCUAUAGU
...........(((((((((.(((.......(((((((((((.(((((((((........)))).))))).)))))))))))))).)).))))--)))..... ( -39.51)
>DroYak_CAF1 22 101 + 1
UUCAUUCAUAAAGCAAUGUUCCCUGAAGUAUUUUGUGCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAAAAGACAGCCUUU--GGUAUAGU
......................(..(((..((((((((((((((((.(((((........))))))))))..)))))))))))......))).--.)...... ( -29.30)
>DroPer_CAF1 15298 103 + 1
GUGGCCCAAAAAUUGAUGUUCCUUGAAGUAUCUUCCACGAUGCUGGCACCGUCGCUCCCUAUGGUCCUGCCGACCACACAGGAGGCAGCCCGUCCGAGAUCGU
(.(((.........((((..((....((((((......))))))))...))))((..(((.(((((.....)))))...)))..)).))))............ ( -26.80)
>consensus
UUCGUUCAUAAAGCAAUGUUCCCUGAAGUACUUUGUGCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAAAAGGCAGCCUUU__GGUAUAGU
...........................((..(((((((((((((((.(((((........))))))))))..))))))))))..))................. (-23.16 = -22.42 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:43 2006