| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,131,093 – 10,131,213 |
| Length | 120 |
| Max. P | 0.615351 |
| Location | 10,131,093 – 10,131,213 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.44 |
| Mean single sequence MFE | -47.47 |
| Consensus MFE | -36.81 |
| Energy contribution | -35.93 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10131093 120 - 20766785 GCGAGCAGCAGUGCGAAAUCCUCGGCCAGCAAGGCUAGCGGUAGUCGCAAGCUGUAUGACGUAGCUAAUAAUGCUACGCUUGAGGCUGUGGAGCGCAUGAGUCUCGACCUGGCCGAGCAA ....(((....)))......(((((((((..(((((.(((....(((((.(((....(.((((((.......)))))))....))))))))..)))...)))))....)))))))))... ( -46.40) >DroSim_CAF1 10323 120 - 1 GCGAACAGCAGUGCGAAAUCCUCGGCCAGCAAGGCCAGCGGUAGUCGCAAGCUGUAUGACGUAGAUAGCAAUGCCACGCUUGAGGCUGUGGAGCGCAUGAGUCUCGACCUGGCCAAGCAA (((.(((((..(((((...((.(((((.....)))).).))...))))).)))))....))).....((...((((.(.(((((((((((.....))).))))))))).))))...)).. ( -44.90) >DroYak_CAF1 55 120 - 1 GCAAGCAGUAGUGCUAAAUCCUCGGCCAGCAAGGCCAGCGGAAGUCGCAAGCUGUAUGGCGUAGAUGACAAUGUCACGCUUGAGGCUGUCGAACGCAUGAGUCUUGACCUGGCCGAGAAG ...((((....)))).....((((((((((((((((((((....(((..((((....(((((.(((......))))))))...))))..))).))).)).))))))..)))))))))... ( -51.10) >consensus GCGAGCAGCAGUGCGAAAUCCUCGGCCAGCAAGGCCAGCGGUAGUCGCAAGCUGUAUGACGUAGAUAACAAUGCCACGCUUGAGGCUGUGGAGCGCAUGAGUCUCGACCUGGCCGAGCAA .((.(((((..(((((...((.(((((.....)))).).))...))))).))))).))..............((((.(.(((((((((((.....))).))))))))).))))....... (-36.81 = -35.93 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:36 2006