Locus 2915

Sequence ID 2R_DroMel_CAF1
Location 10,130,131 – 10,130,240
Length 109
Max. P 0.605233
window4805

overview

Window 5

Location 10,130,131 – 10,130,240
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.96
Mean single sequence MFE -32.77
Consensus MFE -22.70
Energy contribution -22.48
Covariance contribution -0.22
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.605233
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10130131 109 - 20766785
-----------AGGCAGAAGCGGGAAAUAUUGUUGAGGAAAGCGACUCCCAACUUGCUGAGGAUUUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCCAA
-----------.(((...(((((......)))))........((((((((...(((((...(((((((...(((((((.(....)))))))).))))))))))))))))))))..))).. ( -32.10)
>DroSec_CAF1 14276 109 - 1
-----------AGGCAGUAUCCGGAAAUAUUCUUGAAGAAAGCGAUUCCCAACUUGCUGAGGAUUUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCCAA
-----------.(((....((.(((.....))).))......((((((((...(((((...(((((((...(((((((.(....)))))))).))))))))))))))))))))..))).. ( -29.90)
>DroSim_CAF1 14071 109 - 1
-----------AGGCAGUAUCCGGAAAUAUUCUUGAGGAAAGCGAUUCCCAACUUGCUGAGGAUUUUAAAUUGGCUGAAGAGAUUUUAGCCGCUGAAGUUGGUAAGGCAGUUGAAGCCAA
-----------.(((....((.(((.....))).))((((.....))))(((((.(((...(((((((...(((((((((...))))))))).))))))).....))))))))..))).. ( -28.00)
>DroEre_CAF1 14378 109 - 1
-----------AGGCAGUAUCGGGAAAUAUACUUGAGGAAAGCGACUCCCAGCUGGCUGAGGAUAUUAAAUUGGCUGAAGAGAUCUUAGCCGCUCAGGUUGGUAAGGGAGUUGAAGCUAA
-----------.(((....(((((.......)))))......((((((((.((..(((((((((.....)))((((((.(....))))))).)))).))..))..))))))))..))).. ( -35.40)
>DroYak_CAF1 14016 109 - 1
-----------AGACAGUUUCGGGAAAUAUACUUGAGGAAAGCGACUCCCAGCUGGCUGAGGACAUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCUAA
-----------....((((((..........(((.....))).(((((((.((..(((..((.........(((((((.(....))))))))))..)))..))..))))))))))))).. ( -31.70)
>DroAna_CAF1 13250 120 - 1
UCUUGAAGUGGGGGAGGUGACGGAAGACAUGCAGGAGGUAAGCGACUCCCAGCUCGCUGAAGACAUUAAGCUGGCCGAGGAGAUCUUGGCCGCCGAGGUCGGAAAGGGAGUUGAAGUAAC
(((((..(((.....(....)......))).)))))......((((((((((((.(.((....)).).))))(((((((.....))))))).(((....)))...))))))))....... ( -39.50)
>consensus
___________AGGCAGUAUCGGGAAAUAUUCUUGAGGAAAGCGACUCCCAACUUGCUGAGGAUAUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCCAA
....................................((....((((((((.((..(((..((.........(((((((.......)))))))))..)))..))..))))))))...)).. (-22.70 = -22.48 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006