Locus 2910

Sequence ID 2R_DroMel_CAF1
Location 10,114,771 – 10,114,891
Length 120
Max. P 0.608954
window4797

overview

Window 7

Location 10,114,771 – 10,114,891
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -32.90
Consensus MFE -16.48
Energy contribution -17.26
Covariance contribution 0.78
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.50
SVM decision value 0.15
SVM RNA-class probability 0.608954
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10114771 120 - 20766785
CAUAAACAUCAUUGAAAACAACCAUGUAUUGAAUGUGGUACUCAAGUACAUGAAGGGCGGCCAGGAAAAGCUCACAGAAGAGGCUAAGGCCGCCUAUCAGACCCUAAAGGGUGAAACAGC
......((.((((.((.(((....))).)).))))))((((....)))).(((.((((((((......(((((......)).)))..)))))))).))).((((....))))........ ( -35.90)
>DroGri_CAF1 4503 120 - 1
UGUGAACAUCAUUGAGAAUAACAAUGUACUCAAUGUGGUACUGAAGUUCAUGAAGGGUCAGCAGGAAAAUCUAAGUGAGCAGGCCAGGGCUGCCUACCAAAAUAUGCGUGGCAGCAACAG
......((.(((((((.(((....))).)))))))))...(((..((((((..(((.((.....))...)))..))))))........((((((.((((.....)).))))))))..))) ( -32.60)
>DroSim_CAF1 5503 120 - 1
CCUUAACAUCAUUGAAAACAACCAUGUAUUGAAUGUGGUACUCAAGUACAUGAAGGGCGGCCAGGAGAAGCUCACAGAAGAGGCGAAGGCCGCCUAUCAGACCAUAAAGGGUGAAACAGC
((((..((.((((.((.(((....))).)).))))))((((....)))).(((.((((((((....(...(((......))).)...)))))))).))).......)))).......... ( -33.60)
>DroEre_CAF1 4365 120 - 1
CAUUAACAUCAUUGAAAACAACCAUGUACUGAAUGUCGUUCUCAAGUACAUGAAGGGUGGCCAGGAGAAGCUCACAGACGAGGCUAAGGCCGCCUAUCAGACCCUAAAGGGCGACACAGC
.....((((..(((....)))..)))).(((..(((((((((..((....(((.((((((((...((...(((......))).))..)))))))).)))....))..)))))))))))). ( -38.60)
>DroWil_CAF1 4432 120 - 1
UGUCAACAUUAUCCUGAAUAACCAUGUUCUAAAUGUGGUUCUCAAGUUCAUGAACGGCAAUCAAGAAAAACUAAGCGAGGAGGCGAUGGCUGCCUAUCAGAAUCUGAAAGGAUCCAACUC
..........(((((....((((((((.....)))))))).(((..(((.(((..((((..((((.....))..((......))..))..))))..))))))..))).)))))....... ( -25.50)
>DroYak_CAF1 4246 120 - 1
CAUUAACAUCAUUGAAAACAACCAUGUAUUGAAUGUGGUUCUUAAGUACAUGAAGGGCGGCCAAGAGAAGCUGACAGACGAAGCUAAGGCCGCCUAUCAGACCCUAAAAGGCGACACAGC
.....((((..(((....)))..))))......(((.((..((.((....(((.((((((((......((((.........))))..)))))))).)))....)).))..)).))).... ( -31.20)
>consensus
CAUUAACAUCAUUGAAAACAACCAUGUACUGAAUGUGGUACUCAAGUACAUGAAGGGCGGCCAGGAAAAGCUCACAGAAGAGGCUAAGGCCGCCUAUCAGACCCUAAAGGGCGACACAGC
....................(((((((.....)))))))...........(((.((((((((.........................)))))))).)))..................... (-16.48 = -17.26 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:27 2006