Locus 291

Sequence ID 2R_DroMel_CAF1
Location 1,720,870 – 1,720,990
Length 120
Max. P 0.500000
window606

overview

Window 6

Location 1,720,870 – 1,720,990
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -44.50
Consensus MFE -28.63
Energy contribution -28.55
Covariance contribution -0.08
Combinations/Pair 1.43
Mean z-score -1.45
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1720870 120 - 20766785
CAGAAGGCGGGCAUCGCCCUGGACGCCUAUUUGCUGCUGGCCAAGCUGUGCUUUGCCUGCGGCGAGUAUGAGCAGAGUCUAGACAAUUUCGUCAAGGCAGAACUCAACACGCUUGCCGAG
.....(((((((...(((.((((((((((((((((((.(((.((((...)))).))).)))))))))).).))...)))))(((......)))..))).(....).....)))))))... ( -47.80)
>DroVir_CAF1 22043 120 - 1
CAAAAGGCGGGCAUCGCUCUUGACGCGCACCUGCUGCUGGCCAAGCUGUGCUACGCCUGCGGCGAGUACGAGCAGAGUUUGGAGAACUUUGUCAAGGCGGAGCUCAAUACGCUCGCUGAG
.....(((((((..(((.((((((((((....)).))...(((((((.((((.((((...))))......)))).)))))))........)))))))))(....).....)))))))... ( -47.50)
>DroGri_CAF1 13722 120 - 1
CAAAAGGCGGGCGUCGCUUUGGAUGCCUAUUUGCUGUUGGCCAAAUUGUGUUAUGCCUGCGGCGAAUACGAGCAGAGCCUGGAGAACUUUGUCAAAGCCGAACUGAAUACGCUGGCCGAA
.....(((.(((((((.(((((.....((((((((((.(((.............))).)))))))))).((.(((((.........)))))))....))))).)))...)))).)))... ( -38.22)
>DroWil_CAF1 6968 120 - 1
CAGAAGGCGGGCAUAGCUCUCGAUGCCUACCUUCUGCUGGCCAAAUUGUGUUUCGCCUGUGGCGAAUAUGAAACCAGUUUGGAUAACUUUGUCAAAGCGGAGCUUAAUACCCUGGCCGAG
(((((((..(((((........)))))..))))))).((((((.((((.(((((((...(((((((.......((.....)).....)))))))..))))))).))))....)))))).. ( -45.50)
>DroMoj_CAF1 21071 120 - 1
CAAAAGGCGGGCAUAGCCUUGGAUGCGUAUUUGCUGCUGGCUAAGCUCUGCUACGCCUGCGGCGAGUACGAGCAGAGUCUGGAGAACUUCAUCAAGGCGGAGCUGAAUACGCUGGCCGAG
.....(((.(((...(((((((...((((((((((((.(((..(((...)))..))).)))))))))))).........((((....)))))))))))(..........)))).)))... ( -47.90)
>DroAna_CAF1 6371 120 - 1
CAGAAAGCGGGGAUCGCACUGGACGCCUAUUUGCUGCUGGCCAAAUUGUGUUUUGCUUGCGGCGAGUACGAGCAAAGCUUGGACAACUUUGUCAAGGCAGAGCUUAAUACGCUGGCGGAG
(((...(((.....))).)))..((((((((((((((.(((.((((...)))).))).)))))))))).((((...((((.((((....)))).))))...))))........))))... ( -40.10)
>consensus
CAAAAGGCGGGCAUCGCUCUGGACGCCUAUUUGCUGCUGGCCAAACUGUGCUACGCCUGCGGCGAGUACGAGCAGAGUCUGGAGAACUUUGUCAAGGCGGAGCUCAAUACGCUGGCCGAG
.....(((.(((......((((((.(.((((((((((.(((..(((...)))..))).)))))))))).)......))))))....((((((....))))))........))).)))... (-28.63 = -28.55 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:42 2006