Locus 2909

Sequence ID 2R_DroMel_CAF1
Location 10,041,643 – 10,041,755
Length 112
Max. P 0.598176
window4796

overview

Window 6

Location 10,041,643 – 10,041,755
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 97.86
Mean single sequence MFE -23.08
Consensus MFE -22.18
Energy contribution -22.18
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 0.96
SVM decision value 0.13
SVM RNA-class probability 0.598176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10041643 112 + 20766785
AAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAAUGUAUGUGUAACAAAUAACAACAAAUUCUGGC
..........(((((((.((((....))))............(((.(((..((((...(((........)))..))))..))).)))..................))))))) ( -22.40)
>DroSec_CAF1 12597 112 + 1
CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAUAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCUCCGCAAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC
..........(((((((.((((....))))............(((.(((..(((((..(((........))).)))))..))).)))..................))))))) ( -23.00)
>DroSim_CAF1 12823 112 + 1
CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCGAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC
..........(((((((.((((....))))............(((.(((..((((...(((........)))..))))..))).)))..................))))))) ( -23.40)
>DroEre_CAF1 14603 112 + 1
CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAUUGUGUGUGUAACAAAUAACAACAAAUUCUGGC
..........(((((((.((((....))))............(((.((((.((((...(((........)))..)))).)))).)))..................))))))) ( -24.20)
>DroYak_CAF1 13587 112 + 1
CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC
..........(((((((.((((....))))............(((.(((..((((...(((........)))..))))..))).)))..................))))))) ( -22.40)
>consensus
CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC
..........(((((((..((.....((((((....))))))(((.(((..((((...(((........)))..))))..))).)))..............))..))))))) (-22.18 = -22.18 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:26 2006