Locus 2908

Sequence ID 2R_DroMel_CAF1
Location 10,037,429 – 10,037,521
Length 92
Max. P 0.932402
window4795

overview

Window 5

Location 10,037,429 – 10,037,521
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.89
Mean single sequence MFE -25.94
Consensus MFE -16.64
Energy contribution -15.83
Covariance contribution -0.80
Combinations/Pair 1.17
Mean z-score -2.44
Structure conservation index 0.64
SVM decision value 1.22
SVM RNA-class probability 0.932402
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10037429 92 + 20766785
UUGUUGCUUUGAUUGGCUG-CAGCUUCUGCUUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA
(((((((((......((((-(.(((((.(((....--...(((((........)))))......))).))))).)))))..)))))))))..... ( -28.92)
>DroPse_CAF1 14035 88 + 1
UUGUUGCUUUUAUUGGGCGUCUGCUUCUGCUUCUGUUUCUGUUUGAUGUUUGCCAAACUAAUUUGGCGGAAGCAACA-------CAGCAGAGAGA
.....((((.....)))).((((((..((((((((((...(((((........)))))......))))))))))...-------.)))))).... ( -27.30)
>DroSim_CAF1 8617 92 + 1
UUGUUGCUUUGAUUGGCUG-CAGCUUCUGCUUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCUGGAAUA
..(((((((......((((-(.(((((.(((....--...(((((........)))))......))).))))).)))))..)))))))....... ( -27.12)
>DroEre_CAF1 10266 78 + 1
UUGUUGCUUUGCCUG---------------UUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA
(((((((((((((((---------------(((((--((.(((((........)))))......))).)))))))..))).)))))))))..... ( -22.90)
>DroYak_CAF1 9269 92 + 1
UUGUUGCUUUGAUUGGAUG-CAGCUACUGCUUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA
(((((((((....((....-))(((.(((((((.(--((.(((((........)))))......))).))))))).)))..)))))))))..... ( -24.30)
>DroPer_CAF1 10381 82 + 1
UUGUUGCUUUUAUUGGGCGUCUGCUUCUGCUUC------UGUUUGAUGUUUGCCAAACUAAUUUGGCGGAAGCAACA-------CAGCAGAGAGA
.((((((((((((..((((...((....))...------))))..)))..(((((((....))))))))))))))))-------........... ( -25.10)
>consensus
UUGUUGCUUUGAUUGGCUG_CAGCUUCUGCUUUCG__CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA
.((((((((((...........((....)).....................((((((....)))))))))))))))).................. (-16.64 = -15.83 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:25 2006