Locus 2906

Sequence ID 2R_DroMel_CAF1
Location 10,036,009 – 10,036,124
Length 115
Max. P 0.557925
window4793

overview

Window 3

Location 10,036,009 – 10,036,124
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.97
Mean single sequence MFE -40.52
Consensus MFE -30.09
Energy contribution -32.05
Covariance contribution 1.96
Combinations/Pair 1.09
Mean z-score -2.06
Structure conservation index 0.74
SVM decision value 0.05
SVM RNA-class probability 0.557925
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10036009 115 + 20766785
GGAUCCAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGAAGCUCAUCUCGUUCAACUUCAC
.......((((((.((.-.(((((((...(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))).))))))).))))))))........ ( -42.00)
>DroSec_CAF1 6966 115 + 1
GGAUCCAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC
.......((((((.((.-.(((((.(((.(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))))))))))).))))))))........ ( -42.90)
>DroSim_CAF1 7165 115 + 1
GGAUCCAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC
.......((((((.((.-.(((((.(((.(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))))))))))).))))))))........ ( -42.90)
>DroEre_CAF1 8820 115 + 1
GGAUCUAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC
.......((((((.((.-.(((((.(((.(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))))))))))).))))))))........ ( -42.90)
>DroYak_CAF1 7825 115 + 1
GAAUCCAGAGCGAAGAC-GAAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGCCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACAUCAC
.......((((((.((.-((.((((((((.((.....)).)))..............((((((((((..(----(.......))..))))))))))))))))).))))))))........ ( -39.60)
>DroPer_CAF1 6559 97 + 1
AGAUACGGGUCUAAGAUGGGAGCUUCGUGCCUCAUUAAGCCGGAAAAGUGUCAAAUGUCCUGUGUGGCUGCCAAUGGCAGC---------------GGCACUC--------UACCAUCCC
.(((((...(((..((((((.((.....)))))))).....)))...))))).........((((.((((((...))))))---------------.))))..--------......... ( -32.80)
>consensus
GGAUCCAGAGCGAAGAC_GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG____UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC
.......((((((.((...(((((((.((((......((((((...((.(.(....).)))..))))))......))))(((........)))...))))))).))))))))........ (-30.09 = -32.05 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:23 2006