Locus 2904

Sequence ID 2R_DroMel_CAF1
Location 10,034,001 – 10,034,118
Length 117
Max. P 0.997113
window4791

overview

Window 1

Location 10,034,001 – 10,034,118
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 93.82
Mean single sequence MFE -34.92
Consensus MFE -29.50
Energy contribution -29.22
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -2.50
Structure conservation index 0.84
SVM decision value 2.80
SVM RNA-class probability 0.997113
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10034001 117 - 20766785
UAUUUUAUUUUUGUUGCUGCUGGCGGUUUUUCAGCUGCC-GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCAC
..........(((..((((((((((((......))))))-)))(((((((.....)))))))...(((((((((..(........)..)))))))))......)))..)))....... ( -36.30)
>DroSec_CAF1 4982 116 - 1
UAUUUUAUUGUUGUUGCUGCUGGCGGUUUUU-AGCUGCC-GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCCC
..........(((..((((((((((((....-.))))))-)))(((((((.....)))))))...(((((((((..(........)..)))))))))......)))..)))....... ( -36.10)
>DroSim_CAF1 5178 116 - 1
UAUUUUAUUGUUGUUGCUGCUGGCGGUUUUU-AGCUGCC-GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCCC
..........(((..((((((((((((....-.))))))-)))(((((((.....)))))))...(((((((((..(........)..)))))))))......)))..)))....... ( -36.10)
>DroEre_CAF1 6929 113 - 1
UAUUUUAUUGUUGUU---GCUGGCGGUUUUU-UGCUGCC-GGUAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAUCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUACCCAU
.....(((((....(---(((((((((....-.))))))-))))((((((.....))))))....(((((((((..((........)))))))))))...........)))))..... ( -32.60)
>DroYak_CAF1 5939 114 - 1
UAUUUUAUUGUUGUU---GCUGGCGGUUUUU-UGCCGCCAGGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAGUAAGCUUUAGUUUUAGAUUCAGUCCCCAU
......((((..(((---.((((((((....-.))))))))(((((((((.....)))))))...(((((((((..(........)..))))))))).))....))).))))...... ( -33.50)
>consensus
UAUUUUAUUGUUGUUGCUGCUGGCGGUUUUU_AGCUGCC_GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCAC
..................(((((((((......)))))).)))(((((((.....)))))))...(((((((((..(........)..)))))))))..................... (-29.50 = -29.22 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:21 2006