Locus 29

Sequence ID 2R_DroMel_CAF1
Location 1,198,697 – 1,198,797
Length 100
Max. P 0.857229
window51

overview

Window 1

Location 1,198,697 – 1,198,797
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -28.72
Consensus MFE -10.98
Energy contribution -12.78
Covariance contribution 1.81
Combinations/Pair 1.16
Mean z-score -2.45
Structure conservation index 0.38
SVM decision value 0.81
SVM RNA-class probability 0.857229
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1198697 100 - 20766785
UACU-UGUGCAGCCGCAGCA------------GCAG----CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC---
....-....(((((((((..------------.(((----((......)))))(((......)))..)))))))))((((((..(((((....)))))..).)))))..........--- ( -31.50)
>DroVir_CAF1 18028 92 - 1
AAAU-UGUGCCGUGA------------------CGUUAUUUUUGUUGUGGUUGAAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUGGUUUGAUUGAUUCAG------CUGCC---
.(((-(..((((..(------------------((.......)))..))))....))))..........(((((((((..((..(........)..))..).))))------)))).--- ( -24.30)
>DroSim_CAF1 13522 100 - 1
UACU-UGUGCAGCCGCAGCA------------GCAG----CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC---
....-....(((((((((..------------.(((----((......)))))(((......)))..)))))))))((((((..(((((....)))))..).)))))..........--- ( -31.50)
>DroEre_CAF1 17247 112 - 1
UACU-UGUGCAGCCGCAGCCGCAGUCGUAGCCGCAG----CCUUUUGUGGUUGAAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC---
....-...(((((..(((((((((....((((((((----....))))))))(((.......)))..)))))))))((((((..(((((....)))))..).)))))....))))).--- ( -36.40)
>DroWil_CAF1 23492 90 - 1
GACUUUGUG----------G------------GUAG----CG----UUGGUGGGAAAUUAAACUCAUUUGCGGUUGAUUGAUUGAUGGAUGGUUUGAUUGAUUCAGUUGUUGCUCUCCGG
.......((----------(------------..((----((----..(.((((.((((((((.(((..((((((....))))).)..)))))))))))..)))).)...))))..))). ( -22.70)
>DroYak_CAF1 11795 94 - 1
UACU-UGUGCAGCCC------------------CAG----CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC---
....-...(((((.(------------------(((----((......)))))).....................(((((((..(((((....)))))..).))))))...))))).--- ( -25.90)
>consensus
UACU_UGUGCAGCCG_________________GCAG____CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC___
........(((((...............................(((..(.((((.......)))).)..)))..(((((((..(((((....)))))..).))))))...))))).... (-10.98 = -12.78 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:53 2006