Locus 2894

Sequence ID 2R_DroMel_CAF1
Location 10,000,116 – 10,000,213
Length 97
Max. P 0.511712
window4777

overview

Window 7

Location 10,000,116 – 10,000,213
Length 97
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 88.78
Mean single sequence MFE -36.88
Consensus MFE -26.62
Energy contribution -27.62
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.511712
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10000116 97 + 20766785
CGACGGAGUUGGCCGGGCAGCGGAAGAAA-----G-GGGGCUACAAAAGGCCCACUGGGCGCCCAAAAGAGAGGGAGUUGCUCCAAGAGGCGCUCACUCGAAG
(((..((((..(((((((..(....)..(-----(-.(((((......))))).))....)))).........((((...))))....)))))))..)))... ( -35.40)
>DroSec_CAF1 3420 96 + 1
CGACGUAGUAGUCCGGGCAGCGGAAGAAA-----G-GGGGCUCCAAAAGGCCCACUGGGCGCCCA-AAGAGAGGGAGUUGAUCCAAGAGCCGAUCACUCGAAG
.(((......))).((((..(....)..(-----(-.(((((......))))).))....)))).-........((((.((((........)))))))).... ( -29.80)
>DroSim_CAF1 3581 96 + 1
CGACGGAGUAGUCCGGGCAGCGGAAGAAA-----G-GGGGCUCCAAAAGGCCCACUGGGCGCCCA-AAGAGAGGGAGUUGCUCCAAGAGCCGAUCACUCGAAG
....((((((((((((....(....)...-----.-.(((((......))))).)))))).(((.-......)))...))))))..(((.......))).... ( -33.70)
>DroEre_CAF1 3642 102 + 1
CGACGGAGUAGUCCGGCCAUCGGAAGAGGGGAGGGGGGGACUCCAAAAGGCCCACUGGGCGCCCA-AGGAGGGGGAGUGGCUCCAAGAGCCGCUCACUCGAAG
.....((((..(((..((.((....))(((..((((....)))).....((((...)))).))).-.))..)))(((((((((...))))))))))))).... ( -48.60)
>consensus
CGACGGAGUAGUCCGGGCAGCGGAAGAAA_____G_GGGGCUCCAAAAGGCCCACUGGGCGCCCA_AAGAGAGGGAGUUGCUCCAAGAGCCGAUCACUCGAAG
....(((((.((((((....(....)...........(((((......))))).)))))).(((........)))....)))))..(((.......))).... (-26.62 = -27.62 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:07 2006