Locus 2891

Sequence ID 2R_DroMel_CAF1
Location 9,997,717 – 9,997,819
Length 102
Max. P 0.685799
window4774

overview

Window 4

Location 9,997,717 – 9,997,819
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 96.57
Mean single sequence MFE -16.93
Consensus MFE -14.90
Energy contribution -14.58
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -1.35
Structure conservation index 0.88
SVM decision value 0.32
SVM RNA-class probability 0.685799
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9997717 102 - 20766785
UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCCACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG
.......(((..(((.(((((.............(((.((((....)))).)))..............(((.((....)).)))...)))))..)))..))) ( -15.40)
>DroSec_CAF1 1301 102 - 1
UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCGACUUCGCUUAACCCUUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG
.......(((..(((.(((((....(((((((((....))))..))))).....((.......(((.....))).......))....)))))..)))..))) ( -18.14)
>DroSim_CAF1 1311 102 - 1
UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCGACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCGACUUUGUGACGUUUUUGG
.......(((..(((.(((((....(((((((((....))))..)))))...((((........((.....))........))))..)))))..)))..))) ( -20.09)
>DroEre_CAF1 1290 99 - 1
UUAUUAACCAUUAACACACAACUUCCGAAUUCCAUAACUGGAAUAUU---CUUCGCUUAACCCCUGAAUGCCAACCCCUUUGUAACUUUGUGACGUUUUUGG
.......(((..(((.(((((.......((((((....))))))(((---(..............))))..................)))))..)))..))) ( -13.84)
>DroYak_CAF1 1321 102 - 1
UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUACUCGACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG
.......(((..(((.(((((....(((((((((....))))))..)))...................(((.((....)).)))...)))))..)))..))) ( -17.20)
>consensus
UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCGACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG
.......(((..(((.(((((.......((((((....))))))........................(((.((....)).)))...)))))..)))..))) (-14.90 = -14.58 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:04 2006