| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,997,452 – 9,997,547 |
| Length | 95 |
| Max. P | 0.999606 |
| Location | 9,997,452 – 9,997,547 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 93.37 |
| Mean single sequence MFE | -18.88 |
| Consensus MFE | -17.78 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.94 |
| SVM decision value | 3.78 |
| SVM RNA-class probability | 0.999606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9997452 95 + 20766785 CUCUCCUCCUGUUCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUUUGCCAACCUGAUCG ................................((((((.((.....)).)))))).....(.((.((((.((((.......)))))))).)).). ( -20.40) >DroSec_CAF1 1037 95 + 1 UUCUUCUCUCGUUCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUUUGCCAACCUGAUCG ................................((((((.((.....)).)))))).....(.((.((((.((((.......)))))))).)).). ( -20.40) >DroSim_CAF1 1046 95 + 1 UUCUCCUCUCGUUCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUUUGCCAACCUGAUCG ................................((((((.((.....)).)))))).....(.((.((((.((((.......)))))))).)).). ( -20.40) >DroEre_CAF1 1028 95 + 1 CUGCCCUCCCUUUCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUUGUUCGGUAUUCUCUUCGCCAACCUGAUCG ................................((((((.((.....)).)))))).....(.((..(((.(((.........))))))..)).). ( -14.70) >DroYak_CAF1 1059 95 + 1 GUCCACUUCCUUUCCGCACCUGUUUAUCAUUCGCUCCUUCUUUUCAAGCAGGAGCACCCUGUUCAUGUUCGGUAUUCUCUUUGCCAACCUGAUCG ................................((((((.((.....)).)))))).....(.(((.(((.((((.......))))))).))).). ( -18.50) >consensus CUCUCCUCCCGUUCCGCACCUGUUUAUCAUUCGCUCCUCCUUUUCAAGCAGGAGCACCCUGUUCUGGUUCGGUAUUCUCUUUGCCAACCUGAUCG ................................((((((.((.....)).)))))).....(.((.((((.((((.......)))))))).)).). (-17.78 = -18.38 + 0.60)
| Location | 9,997,452 – 9,997,547 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 93.37 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -19.44 |
| Energy contribution | -19.64 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9997452 95 - 20766785 CGAUCAGGUUGGCAAAGAGAAUACCGAACCAGAACAGGGUGCUCCUGCUUGAAAAGGAGGAGCGAAUGAUAAACAGGUGCGGAACAGGAGGAGAG (((((.((((((...........)).))))....((...(((((((.(((....))))))))))..)).......))).)).............. ( -22.40) >DroSec_CAF1 1037 95 - 1 CGAUCAGGUUGGCAAAGAGAAUACCGAACCAGAACAGGGUGCUCCUGCUUGAAAAGGAGGAGCGAAUGAUAAACAGGUGCGGAACGAGAGAAGAA (((((.((((((...........)).))))....((...(((((((.(((....))))))))))..)).......))).))...(....)..... ( -22.60) >DroSim_CAF1 1046 95 - 1 CGAUCAGGUUGGCAAAGAGAAUACCGAACCAGAACAGGGUGCUCCUGCUUGAAAAGGAGGAGCGAAUGAUAAACAGGUGCGGAACGAGAGGAGAA (((((.((((((...........)).))))....((...(((((((.(((....))))))))))..)).......))).))...(....)..... ( -22.80) >DroEre_CAF1 1028 95 - 1 CGAUCAGGUUGGCGAAGAGAAUACCGAACAAGAACAGGGUGCUCCUGCUUGAAAAGGAGGAGCGAAUGAUAAACAGGUGCGGAAAGGGAGGGCAG (((((.(((...(.....)...))).........((...(((((((.(((....))))))))))..)).......))).)).............. ( -21.10) >DroYak_CAF1 1059 95 - 1 CGAUCAGGUUGGCAAAGAGAAUACCGAACAUGAACAGGGUGCUCCUGCUUGAAAAGAAGGAGCGAAUGAUAAACAGGUGCGGAAAGGAAGUGGAC ...((...((.(((.........((...........)).(((((((..((....)).))))))).............))).))...))....... ( -17.90) >consensus CGAUCAGGUUGGCAAAGAGAAUACCGAACCAGAACAGGGUGCUCCUGCUUGAAAAGGAGGAGCGAAUGAUAAACAGGUGCGGAACGGGAGGAGAA (((((.(((...(.....)...))).........((...(((((((.(((....))))))))))..)).......))).)).............. (-19.44 = -19.64 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:03 2006