Locus 2888

Sequence ID 2R_DroMel_CAF1
Location 9,996,743 – 9,996,846
Length 103
Max. P 0.927875
window4767

overview

Window 7

Location 9,996,743 – 9,996,846
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 95.92
Mean single sequence MFE -33.14
Consensus MFE -31.72
Energy contribution -31.32
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -1.36
Structure conservation index 0.96
SVM decision value 1.19
SVM RNA-class probability 0.927875
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9996743 103 + 20766785
GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUUCGCGCUCUUUCGCUCUCUUU
....(((((((.......(....)...((((((((......(....)....((((((.....))))))))).((((....))))))))).....))))))).. ( -32.70)
>DroSec_CAF1 301 103 + 1
GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGCGCGCUCUUUCGCUCUCUUU
....(((((((((((...(....)....((((.........(....)....((((((.....))))))(((((....))))))))))).))...))))))).. ( -33.20)
>DroSim_CAF1 301 103 + 1
GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGCGCGCUCUUUCGCUCUCUUU
....(((((((((((...(....)....((((.........(....)....((((((.....))))))(((((....))))))))))).))...))))))).. ( -33.20)
>DroEre_CAF1 244 103 + 1
GAUUGGGGGGUAGGCGAAGGCAACAACGGCGCAGCAUAAAAAGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGUGCGCUCUGUCGCUCCCUUU
....(((((((..((....))....((((.((.((((..............((((((.....))))))(((((....))))))))))).)))).))))))).. ( -36.90)
>DroYak_CAF1 296 102 + 1
GAUUGGGGGGUAGGCAAAAGCAACAACGGCGCAGCAUAAAAAGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGU-CGCGCUCUCUCGCUCUCUUU
....(((((((((((....))......(((((.((.......)).......((((((.....))))))(((((....)))))-.)))))..)).))))))).. ( -29.70)
>consensus
GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGCGCGCUCUUUCGCUCUCUUU
....(((((((..((....))......(((((.((.......)).......((((((.....))))))(((((....)))))..))))).....))))))).. (-31.72 = -31.32 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:58 2006