| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,978,022 – 9,978,139 |
| Length | 117 |
| Max. P | 0.570137 |
| Location | 9,978,022 – 9,978,139 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.76 |
| Mean single sequence MFE | -45.33 |
| Consensus MFE | -20.77 |
| Energy contribution | -21.33 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9978022 117 + 20766785 AGUUCAA---CUGCAGCUCGAGCUGCGGAAAGAGUUUUGCCAAAUCGGAGGAUCUGCAGCAACAUUUACUGUCCGAGCACGUCCUAACCCUGCUGAAGUGUUCUUUGUGCUCGGAGCUAU .......---(((((((....)))))))...((((.((((((.(((....))).))..)))).))))....((((((((((....(((.((.....)).)))...))))))))))..... ( -37.10) >DroVir_CAF1 42749 117 + 1 AGUUCAA---CUGCAGCGCCAGCUGCGGCAAAUCCUAUGCCAAGGCCGAGGAGCUGCAGCAGCAUUUGCUCAGCGAACACGUGCUCACGAUGCUCAAGUGUGCCCUCUGCUCGGAGCUGU .((((..---(((((((....)))))))....((((..((....))..))))((((.(((((...)))))))))))))(((.((((.(((.((...((......))..)))))))))))) ( -44.60) >DroPse_CAF1 49680 117 + 1 AGUUUAA---CUGCAGCUCCAGCUGCGGCAAGAGCUUCGGCAAGGCCGAGGAGCUGCAGCAGCACCUCAUCACCGAGCACGUACUCACCCUGCUGAAGUGCGCCCUCUGUUCGGAGAUGU .(((...---((((((((((.....((((....((....))...)))).)))))))))).)))....((((.(((((((((((((((......)).)))))).....))))))).)))). ( -52.20) >DroGri_CAF1 68452 117 + 1 AGUUCAA---UUGCGGCGCCAGUUGUGGCAAAUCUUUUGCCAAAUCGGAGGAACUGCAACAGCAUCUGAUCAGCGAACAUGUCCAGACGCUGCUCAAGUGUGUGAUCUGCUCGGAGCUGU .......---.(((((..((.(...((((((.....))))))...)...))..)))))(((((.(((((.(((.((.....))((.(((((.....))))).))..))).)))))))))) ( -38.20) >DroMoj_CAF1 48972 120 + 1 AGUUCAAUUGCUGCAGCGCCAGCUGCGGCAAGUCCUAUGCCAAGGCGGAGGAGCUGCAUCAGCAUCUGCUGGCCGAGCACGUCCAGACGAUGCUGAAGUGUGUCCUGUGCUCGGAGCUCU (((((..((((((((((....))))))))))............((((.((((..(((.((((((((..((((.((....)).))))..)))))))).)))..)))).))))..))))).. ( -56.20) >DroAna_CAF1 31709 117 + 1 AGUUCAA---CUGCAGCUCCAGCUGCGGCAAGAGCUUCGCCAAGUCGGAGGACCUCCAGCAGCACCUUCUCACCGAGCACGUCCUCACUCUCCUGAAGUGCUCCCUGUGCUCGGAGCUCU .......---(((((((....)))))))..((((((..((...((.((((...)))).)).)).........(((((((((....(((((....).)))).....))))))))))))))) ( -43.70) >consensus AGUUCAA___CUGCAGCGCCAGCUGCGGCAAGACCUUUGCCAAGGCGGAGGAGCUGCAGCAGCAUCUGCUCACCGAGCACGUCCUCACGCUGCUGAAGUGUGCCCUCUGCUCGGAGCUGU (((((.....(((((((....)))))))......(((((......)))))))))).................(((((((.((....))...((......))......)))))))...... (-20.77 = -21.33 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:53 2006