Locus 2879

Sequence ID 2R_DroMel_CAF1
Location 9,953,559 – 9,953,649
Length 90
Max. P 0.506261
window4757

overview

Window 7

Location 9,953,559 – 9,953,649
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 89.04
Mean single sequence MFE -31.82
Consensus MFE -25.74
Energy contribution -26.52
Covariance contribution 0.78
Combinations/Pair 1.17
Mean z-score -1.89
Structure conservation index 0.81
SVM decision value -0.05
SVM RNA-class probability 0.506261
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9953559 90 + 20766785
AACAGCGGAAUAAGGAUCUCAGAAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC
............((((...(((((.(((....(..((((((....))))))..)(((((((...)).)))))..))).))))).)))).. ( -28.70)
>DroSec_CAF1 10794 90 + 1
AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC
....((((.....(((((....)))))((((((((((((((....)))))....(((((((...)).))))).)))))))))....)))) ( -32.00)
>DroSim_CAF1 11523 90 + 1
AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC
....((((.....(((((....)))))((((((((((((((....)))))....(((((((...)).))))).)))))))))....)))) ( -32.00)
>DroEre_CAF1 10934 90 + 1
AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUUGUGC
.((((((((....(((((....)))))....((....)).....))))))))..((((((((..((((.....)))).....)))))))) ( -34.10)
>DroYak_CAF1 11939 90 + 1
AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC
....((((.....(((((....)))))((((((((((((((....)))))....(((((((...)).))))).)))))))))....)))) ( -32.00)
>DroAna_CAF1 9549 81 + 1
AGUAUCAGGACUAUGAAAGCUGGAAGCAGUAGCAGCAGCGGGAAUCCGCUGUGGGCAUAGGC---CAUGUGCAAUGGCUUCUGC------
.....(((((((((....((((....)))).((.(((((((....)))))))..))))))((---(((.....)))))))))).------ ( -32.10)
>consensus
AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC
...(((((((...(((((....))))).....(..((((((....))))))..)(((((........)))))......)))))))..... (-25.74 = -26.52 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:48 2006