Locus 2877

Sequence ID 2R_DroMel_CAF1
Location 9,940,561 – 9,940,651
Length 90
Max. P 0.960854
window4754

overview

Window 4

Location 9,940,561 – 9,940,651
Length 90
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 80.84
Mean single sequence MFE -28.53
Consensus MFE -18.32
Energy contribution -18.10
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -2.65
Structure conservation index 0.64
SVM decision value 1.52
SVM RNA-class probability 0.960854
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9940561 90 + 20766785
UACAUUGCAUAAUAUU-UUCGUGGGAGGGGGGGGGAGGGAUAUA---------UGUGGGGUUUGUGCAUGCCCCACAGGCUCUUAUUGUAAUCACAUAUG
................-...((((...(.((...(((((.....---------((((((((........))))))))..))))).)).)..))))..... ( -24.10)
>DroSec_CAF1 76004 87 + 1
UACAUUGCAUAAUAUAAUUCGUGAGG----------GGGAUAUAUGUGCAGUAUGUGGGGUUGGUGCAUGCCCCACAGGCUCUUAUUGUAAUCACAU---
((((.((((((((((..(((....))----------)..)))).))))))((.((((((((........)))))))).))......)))).......--- ( -30.00)
>DroSim_CAF1 61857 87 + 1
UACAUUGCAUAAUAUAAUUCGUGAGG----------GGGAUAUAUGUGCAGCAUGUGGGGUUGGUGCAUGCCCCACAGGCUCUUAUUGUAAUCACAU---
((((.((((((((((..(((....))----------)..)))).))))))((.((((((((........)))))))).))......)))).......--- ( -31.50)
>consensus
UACAUUGCAUAAUAUAAUUCGUGAGG__________GGGAUAUAUGUGCAG_AUGUGGGGUUGGUGCAUGCCCCACAGGCUCUUAUUGUAAUCACAU___
....................((((.............................((((((((........)))))))).((.......))..))))..... (-18.32 = -18.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:45 2006