Locus 2874

Sequence ID 2R_DroMel_CAF1
Location 9,935,109 – 9,935,210
Length 101
Max. P 0.992079
window4750

overview

Window 0

Location 9,935,109 – 9,935,210
Length 101
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 95.84
Mean single sequence MFE -20.75
Consensus MFE -19.78
Energy contribution -19.78
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.95
SVM decision value 2.31
SVM RNA-class probability 0.992079
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9935109 101 + 20766785
A-AAAAAGAGGCAGAAAGAAAA--AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.-.....((((..((..((((.--.(((((((..(....)..((((............))))...)))))))....))))..))..))))(((......))).. ( -22.40)
>DroSec_CAF1 70582 101 + 1
A-AAAAAGAGGCAGAAAGAAAA--AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.-.....((((..((..((((.--.(((((((..(....)..((((............))))...)))))))....))))..))..))))(((......))).. ( -22.40)
>DroSim_CAF1 56437 101 + 1
A-AAAAAGAGGCAGAAAGAAAA--AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.-.....((((..((..((((.--.(((((((..(....)..((((............))))...)))))))....))))..))..))))(((......))).. ( -22.40)
>DroEre_CAF1 58460 103 + 1
A-AAAAAGAGGCAGAAAAAAAACAAAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.-.....((((..((..........(((((((..(....)..((((............))))...)))))))..........))..))))(((......))).. ( -19.85)
>DroYak_CAF1 53865 103 + 1
A-AAAAAGAGGCAGAAAAAAAAACAAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.-.....((((..((..........(((((((..(....)..((((............))))...)))))))..........))..))))(((......))).. ( -19.85)
>DroAna_CAF1 52051 95 + 1
AAAAAAAGAGGCAGAA---------AAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.......((((..((.---------((((((...(....)..((((............))))...........))))))...))..))))(((......))).. ( -17.60)
>consensus
A_AAAAAGAGGCAGAAAGAAAA__AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU
.......((((..((..........(((((((..(....)..((((............))))...)))))))..........))..))))(((......))).. (-19.78 = -19.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:41 2006