Locus 2865

Sequence ID 2R_DroMel_CAF1
Location 9,891,045 – 9,891,165
Length 120
Max. P 0.505007
window4738

overview

Window 8

Location 9,891,045 – 9,891,165
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.25
Mean single sequence MFE -29.94
Consensus MFE -13.86
Energy contribution -16.02
Covariance contribution 2.16
Combinations/Pair 1.34
Mean z-score -1.74
Structure conservation index 0.46
SVM decision value -0.06
SVM RNA-class probability 0.505007
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9891045 120 + 20766785
AAAGUUAUGGAUGAGGCGUAUGCGUUAUCACGAUGCACAAAGGGCAUUUGAGAAAGCGAUAACACGCUUGAAAACUUGCAAAACUAGCAGUUUCGAACAGCAGUGCCGUAAAAAAGAUAU
....((((((((((.((....)).))))).....((((.....((.((((((((((((......)))))......((((.......)))))))))))..)).)))))))))......... ( -26.70)
>DroSec_CAF1 14319 120 + 1
AAAGUUAUGGAUGAGGCGUAUGCAAUAUUAUUGUGCAAAAAGCGCUUUUGAGAAAGCGAUAAGCUGGUUGAAAAAUUGCAAAAUGACCAGUCUCGAACAGAAGAGCCGUAAAAAAGGGAU
....((((((....(((((.((((((......((((.....))))((((.((..(((.....)))..)).))))))))))..))).))...(((........)))))))))......... ( -26.40)
>DroSim_CAF1 13439 120 + 1
AAAGUUAUGCAUGAGGCGUAUGCAAUAUUAUUGUGCAAAAAGCGCCUUUGAGAAAGCGAUAAGCUGCUUGAAAAAUUGCAAAAUGACCAGUCUCGAACAGAAGAGACGUAAAAAAGGGAU
.......(((....(((((.((((((......((((.....)))).((..((..(((.....))).))..))..))))))..))).)).(((((........)))))))).......... ( -28.20)
>DroEre_CAF1 18450 120 + 1
AAGGUCUUGGAUGAGGCGUUUUCGUUAUUACAGUGCAGGAAACGCUUUUAUGAAAGCAAUAAACUCUAUGAAGAACUGCAGAGUUUGCAGUUUCGAGCAGGAGUGCCAGCGAACUGAUCU
.(((((..(..((.(((((((((((.........((.(....)))....)))))))).....(((((.((..(((((((((...)))))))))....))))))))))..))..).))))) ( -32.42)
>DroYak_CAF1 14332 120 + 1
AAAAACUUGGAUGAGGCGUUCGCUUUAUCACAGAGCAGGAAACGUUUUUCUGAAAGCGAUAAACUCCUUGAAGAACUGCAGAAUGAGCAGUUUCGAGCAGGAGUGCCAGCAAACUGAUCU
.........((((((((....)))))))).(((..((((((.....))))))...((.....((((((.(..(((((((.......)))))))....)))))))....))...))).... ( -36.00)
>consensus
AAAGUUAUGGAUGAGGCGUAUGCAUUAUUACAGUGCAAAAAGCGCUUUUGAGAAAGCGAUAAACUGCUUGAAAAAUUGCAAAAUGAGCAGUUUCGAACAGAAGUGCCGUAAAAAAGAUAU
....((((((..(((((((.((((((.....))))))....)))))))...............(((.(((((..(((((.......)))))))))).))).....))))))......... (-13.86 = -16.02 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:29 2006