Locus 2863

Sequence ID 2R_DroMel_CAF1
Location 9,880,080 – 9,880,181
Length 101
Max. P 0.772225
window4735

overview

Window 5

Location 9,880,080 – 9,880,181
Length 101
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.13
Mean single sequence MFE -34.58
Consensus MFE -20.95
Energy contribution -20.73
Covariance contribution -0.22
Combinations/Pair 1.31
Mean z-score -1.82
Structure conservation index 0.61
SVM decision value 0.53
SVM RNA-class probability 0.772225
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9880080 101 - 20766785
GUUGCGAACUUGCUGUUGGCGGUGCGCAGCAGCUGAUUCAAGUGCUGCGUCAGCGAGGAUCGCAGUGGCGAAAGUUCGUGCAUAGCGCGGUUCUGAA-AUA--U
.((((((.(((((((........((((((((.((......)))))))))))))))))..))))))..((....))((((((...)))))).......-...--. ( -39.00)
>DroVir_CAF1 3107 102 - 1
GUGGCAUACUUGGAGUUGGCGGUGCGCAGCAGCAUGUUCAUAUGUUGCGUGAGUGAUGAUCGCAGCGGCGAGAGCUCAUGCAUUGCACGAUUCUAUGGAGA--G
........(.(((((((((((((((...((((((((....))))))))((((((.....((((....))))..))))))))))))).)))))))).)....--. ( -41.20)
>DroPse_CAF1 5419 103 - 1
GUGACGAACUUGGAGUUGGCAGUGCGCAACAGCUGGUUCAUGUGCUGAGUGAGUGAGGAACGCAGCGGCGAGAGCUCAUGCAUAGCACGAUUCUGUG-GAAAAG
...........(((((((((.(((((.....((((((((...((((.....))))..)))).))))(((....)))..))))).)).)))))))...-...... ( -32.50)
>DroMoj_CAF1 5355 101 - 1
GUUGCAUACUUGGAGUUGGCGGUGCGCAGCAGCAGGUUCAUGUGUUGUGUGAGUGAUGAACGCAGAGGCGAGAGCUCGUGCAUGGCACGAUUCUAAA-AGA--A
.........(((((((((((.((((((.((((((.(....).))))))..((((......(((....)))...)))))))))).)).))))))))).-...--. ( -35.80)
>DroAna_CAF1 3039 101 - 1
GUAAUAAACUUGGAAUUAGCAGUACGCAGUAGCUGAUUCAUGUGCUGGGUAAGCGAAGAGCGCAGAGGAGACAACUCAUGCAUAGCACGGUUCUGUA-AAA--U
...(((((((..((((((((...........))))))))..((((((.(((.(((.....))).(((.......))).))).)))))))))).))).-...--. ( -26.50)
>DroPer_CAF1 5429 103 - 1
GUGACGAACUUGGAGUUGGCAGUGCGCAACAGCUGGUUCAUGUGCUGAGUGAGUGAGGAACGCAGCGGCGAGAGCUCAUGCAUAGCACGAUUCUGUG-GAAAAG
...........(((((((((.(((((.....((((((((...((((.....))))..)))).))))(((....)))..))))).)).)))))))...-...... ( -32.50)
>consensus
GUGACAAACUUGGAGUUGGCAGUGCGCAGCAGCUGGUUCAUGUGCUGAGUGAGUGAGGAACGCAGCGGCGAGAGCUCAUGCAUAGCACGAUUCUGUA_AAA__G
..........((((((((((.((((((..((((..........)))).....(((.....))).))(((....)))...)))).)).))))))))......... (-20.95 = -20.73 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006