Locus 2861

Sequence ID 2R_DroMel_CAF1
Location 9,877,994 – 9,878,085
Length 91
Max. P 0.947927
window4733

overview

Window 3

Location 9,877,994 – 9,878,085
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 92.53
Mean single sequence MFE -35.48
Consensus MFE -30.39
Energy contribution -29.67
Covariance contribution -0.72
Combinations/Pair 1.15
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 1.38
SVM RNA-class probability 0.947927
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9877994 91 - 20766785
CUAAGAAGCAUCUUCGGCUGGCGGAAAAGUGCCGCCUGGUGUUUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG
....((.((..(....).(((.(((((((((.((((.(((((..(((.....)))..))))))))).))))))))))))....))..)).. ( -39.20)
>DroSec_CAF1 1258 91 - 1
CUGAGAAGGAUCUUCGGCUGUCGGAAAAGUGCCGCCUGGUAUACGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG
..((((....))))(((((((.(((((((((.((((.((..((.(((.....))).))..)))))).))))))))).......))))))). ( -34.60)
>DroSim_CAF1 1203 91 - 1
CUGAGAAGCAUUUUCGGCUGUUGGAAAAGUGCCGCCUGGUAUAUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG
..............(((((((.(((((((((.((((.((..((.(((.....))).))..)))))).))))))))).......))))))). ( -34.30)
>DroEre_CAF1 5365 91 - 1
CUGAGAAGCAUCUUUGGCUGGCGGAAAAGUGCCGCCUGGUAAUUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUGGCGGUCGA
.......(.(((.(..(.(((.(((((((((.((((.(((....(((.....)))....))))))).)))))))))))).)..).)))).. ( -33.20)
>DroYak_CAF1 1173 91 - 1
CUGAGAAGCAUCUUUGGCUGGCGGAAAAGUGCCGCCUGGUAUUUGCGUAAGUCGUCUGUGCCGGCGAUACUUUUCCCCAUUUGGCGGUCGG
.......(.(((.(..(.(((.(((((((((.((((.(((((..(((.....)))..))))))))).)))))))))))).)..).)))).. ( -36.10)
>consensus
CUGAGAAGCAUCUUCGGCUGGCGGAAAAGUGCCGCCUGGUAUUUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG
.............(((((((.((((((((((.((((.(((....(((.....)))....))))))).))))))))).......)))))))) (-30.39 = -29.67 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:24 2006