Locus 286

Sequence ID 2R_DroMel_CAF1
Location 1,693,779 – 1,693,894
Length 115
Max. P 0.556118
window597

overview

Window 7

Location 1,693,779 – 1,693,894
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 73.02
Mean single sequence MFE -20.57
Consensus MFE -4.44
Energy contribution -7.18
Covariance contribution 2.74
Combinations/Pair 1.19
Mean z-score -1.59
Structure conservation index 0.22
SVM decision value 0.04
SVM RNA-class probability 0.556118
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1693779 115 + 20766785
AUGCAAUAAAUAUCAAACAUUAAGCUUAAAUUGUAGUUUACCGCUUAAAAUUUGUGAAAAAUGUGUCUGGUGGUGGUACUUACGUCAUCCAUCAGCGCAUCCAAAUUGAGAAUAU
............((.....((((((.(((((....)))))..))))))((((((.((....((((.((((((((((........))).)))))))))))))))))))..)).... ( -24.60)
>DroSec_CAF1 79227 99 + 1
AUACAAUAAAUAUCAAAUAUUAAGCUUAAUUCGUAGUUUAUCGAUUAGAAUUU----------------AUCGAUUUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGGAUAU
................................(((((..((((((........----------------))))))..)).)))...((((.((((..........)))))))).. ( -13.80)
>DroSim_CAF1 76950 114 + 1
AUACAAUAAAUAUCAAAUAUUAAGCUUAAUUCGUAGUUUACCGAUUAAAAUUG-UGAAUAAUGUGACUGGUGGUGGUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGGAUAU
.((((((....(((......((((((........))))))..)))....))))-))......(((.(((((((((((......)))).))))))))))((((.......)))).. ( -24.90)
>DroEre_CAF1 84497 107 + 1
AUGCAAUAAAUAUAAAGUGUUAGGCUUAAUUCAAAGUUUACCGAUAAGAAUUG--------GUGAAUAGUUGGUGGUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGAAUAU
....................((..(((((((....((((((((((....))))--------)))))).((((((((............)))))))).......)))))))..)). ( -24.20)
>DroYak_CAF1 5207 87 + 1
AUGCAGUAAAUAUCAAAUAU--------------ACUU------UGAGAAUAA--------UUGGACUGAUGGUAGUACUUACAUCAUCCAUCAGUGCAUCCAAAUUAAGAAUAU
((((........(((((...--------------..))------)))......--------....((((((((...............))))))))))))............... ( -15.36)
>consensus
AUGCAAUAAAUAUCAAAUAUUAAGCUUAAUUCGUAGUUUACCGAUUAGAAUUG________UGGGACUGAUGGUGGUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGAAUAU
((((................((((((........))))))..........................(((((((((((......)))).))))))).))))............... ( -4.44 =  -7.18 +   2.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:33 2006