Locus 2851

Sequence ID 2R_DroMel_CAF1
Location 9,842,568 – 9,842,661
Length 93
Max. P 0.619690
window4716

overview

Window 6

Location 9,842,568 – 9,842,661
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.16
Mean single sequence MFE -32.73
Consensus MFE -21.61
Energy contribution -22.34
Covariance contribution 0.73
Combinations/Pair 1.28
Mean z-score -1.35
Structure conservation index 0.66
SVM decision value 0.18
SVM RNA-class probability 0.619690
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9842568 93 - 20766785
UGCAGAUACAGCACGCUCUCGCUAUGAUGACGCUUGGGUGUCGGCACCCGGGAACUGUGGACAAUGCGCUGCGAGGAGGAAACUGCAAU----C------GAA-
....(((...((((((.....((((..(....((((((((....)))))))).)..)))).....))).)))..(.((....)).).))----)------...- ( -30.20)
>DroGri_CAF1 26555 98 - 1
UGCAGAUAGAGCACGCUCUCGCUCUGAUGCCGCUUGGGUGUCAGCACCCUGGAGCUGUGCACAAUCAGCUGUGAGGAGGAAACUGCAA-----AACA-AGCAAA
....(((.(.(((((((((.(..((((((((.....))))))))....).))))).)))).).))).(((((..(.((....)).)..-----.)).-)))... ( -34.50)
>DroWil_CAF1 2650 100 - 1
UGCAAAUACAGUACACUCUCGCUAUGAUGACGCUUGGGCGUUAGGACACGAGAACUAUGCACAAUGCGCUGCGAGGAGGAAACUGCAAA---AUAAAAUAGAA-
(((.....((((....(((((......((((((....)))))).....))))).....((.....)))))).....((....)))))..---...........- ( -23.70)
>DroMoj_CAF1 31576 103 - 1
UGCAGAUAGAGCACGCUCUCGCUUUGAUGCCGCUUGGGCGUCAGCACCCGGGAGCUGUGCACAAUCAGCUGCGAGGAGGAAACUGCAAUGGAAAACAGAACAA-
.((((...(((((((((((((..((((((((.....))))))))....))))))).))))....))..))))..(.((....)).).................- ( -38.30)
>DroAna_CAF1 1952 89 - 1
UGCAGGUAUAGCACACUCUCGCUGUGGUGUCGCUUGGGGGUCAGCACCCGGGAGCUGUGCACAAUCAGCUGCGAUGAGGAAACUGCAA--------------G-
(((((.....(((((((((((..(((.((.(.(....).).)).))).)))))).)))))....(((.......))).....))))).--------------.- ( -31.90)
>DroPer_CAF1 5330 102 - 1
UGCAGGUAGAGCACGCUCUCGCUGUGGUGUCGCUUCGGGGUCGGCACCCGGGAGCUGUGGACAAUCAGCUGCGAGGAGGAAACUGCAGG-AAACAAAGAACAA-
.((((.(.((.((((((((((....(((((((((....)).)))))))))))))).))).....))).))))..(.((....)).).(.-...).........- ( -37.80)
>consensus
UGCAGAUAGAGCACGCUCUCGCUAUGAUGACGCUUGGGCGUCAGCACCCGGGAGCUGUGCACAAUCAGCUGCGAGGAGGAAACUGCAA_____AA_A_AACAA_
.((((.....(((((((((((...((.((.(((....))).)).))..)))))).)))))........))))..(.((....)).).................. (-21.61 = -22.34 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:08 2006