Locus 2850

Sequence ID 2R_DroMel_CAF1
Location 9,840,556 – 9,840,667
Length 111
Max. P 0.640663
window4715

overview

Window 5

Location 9,840,556 – 9,840,667
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 93.20
Mean single sequence MFE -24.72
Consensus MFE -21.68
Energy contribution -21.88
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.88
SVM decision value 0.22
SVM RNA-class probability 0.640663
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9840556 111 - 20766785
UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCAAAAAAAAAAAAAACAA
....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))((((.......))))............... ( -23.10)
>DroSec_CAF1 79665 103 - 1
UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCUAAAAAA--A------A
....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))(((((......)))))....--.------. ( -23.30)
>DroSim_CAF1 80979 105 - 1
UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCAAAAAAAAAA------A
....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))((((.......))))........------. ( -23.10)
>DroEre_CAF1 82690 105 - 1
UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCACAGCUUGGGCGAAUACCAAAAAAUAAA------G
....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))((((.......))))........------. ( -23.10)
>DroYak_CAF1 80379 103 - 1
UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCUCGGCCAUAAUUACGGCCAGAGUUUGGGCGAAUACCAAAGAG--AA------A
....((((((.((.((((((..((((((....)).))))))))))..)).)))))).(((((((........))))....(((((.......))))))))--..------. ( -31.00)
>consensus
UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCAAAAAAAAAA______A
....((((((.((.((((((..((((((....)).))))))))))..)).)))))).....(((........)))......((((.......))))............... (-21.68 = -21.88 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:07 2006