| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,838,682 – 9,838,791 |
| Length | 109 |
| Max. P | 0.578592 |
| Location | 9,838,682 – 9,838,791 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.53 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -21.09 |
| Energy contribution | -21.70 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9838682 109 + 20766785 CCAAAUGCCGAAA-AAUAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroSec_CAF1 77794 109 + 1 CCAAAUGCCGAAA-AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroSim_CAF1 79084 109 + 1 CCAAAUGCCGAAA-AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroEre_CAF1 80844 109 + 1 CCAAAUGCCGAAA-AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroYak_CAF1 78529 110 + 1 CCAAAUGCCGAAAAAACGGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAGUUCGUGUUAGAGAGCCAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((........((....))..(((((..(.(((...))).)..))))).((((..((((........))))..)))).....))))).)))).......----------.... ( -28.70) >DroAna_CAF1 75179 106 + 1 --AAAAGCAGAAA-AAU-----------AGCAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACACAAUAAUUACGGCAAUUGGCCAAAAAGCAGUAAACAAAAA --...........-...-----------.((....(((((....)).(((((((((......(((.(((((.....)))))))).....)))))))))))).....))............ ( -23.40) >consensus CCAAAUGCCGAAA_AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA__________AAAA ((((.(((((........((....))..(((((..(.(((...))).)..)))))..................................))))).))))..................... (-21.09 = -21.70 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:57 2006