Locus 2844

Sequence ID 2R_DroMel_CAF1
Location 9,837,233 – 9,837,334
Length 101
Max. P 0.839944
window4699

overview

Window 9

Location 9,837,233 – 9,837,334
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.07
Mean single sequence MFE -11.92
Consensus MFE -11.44
Energy contribution -11.84
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.96
SVM decision value 0.75
SVM RNA-class probability 0.839944
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9837233 101 + 20766785
AAAACUGAACAAAAAAAAAAAAAAGAAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAAGCCAGGCUGAUCGGAGACACGAAAA
...............................................(((.(((..(((.(.((((..........)))).).)))))))))......... ( -12.90)
>DroSec_CAF1 76360 97 + 1
AAAACUGAACUGAACAAAAAA----AAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAUCGGAGACACGAAAA
.....................----......................(((.(((..(((.(.((((..........)))).).)))))))))......... ( -12.70)
>DroSim_CAF1 77689 96 + 1
AAAACUGAACUGAACAAAA-A----AAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAUCGGAGACACGAAAA
...................-.----......................(((.(((..(((.(.((((..........)))).).)))))))))......... ( -12.70)
>DroEre_CAF1 79589 92 + 1
AAAACCAA----AACAAAA-U----AAAAACAAUUUCACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGCCUGAUCGGAGACACGAAAA
........----.......-.----......................(((.(((..(((...((((..........))))...)))))))))......... ( -10.60)
>DroYak_CAF1 77110 91 + 1
AAAACCA-----AACAAAA-U----AAACUCAAUCUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAACGGAGACACGAAAA
.......-----.......-.----......................(((.((...(((.(.((((..........)))).).))).)))))......... ( -10.70)
>consensus
AAAACUGAAC__AACAAAA_A____AAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAUCGGAGACACGAAAA
...............................................(((.(((..(((.(.((((..........)))).).)))))))))......... (-11.44 = -11.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:52 2006