Locus 2843

Sequence ID 2R_DroMel_CAF1
Location 9,837,102 – 9,837,195
Length 93
Max. P 0.875615
window4698

overview

Window 8

Location 9,837,102 – 9,837,195
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.13
Mean single sequence MFE -26.02
Consensus MFE -23.02
Energy contribution -22.88
Covariance contribution -0.14
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.88
SVM decision value 0.89
SVM RNA-class probability 0.875615
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9837102 93 - 20766785
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGCGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40)
>DroSec_CAF1 76229 93 - 1
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAACGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40)
>DroSim_CAF1 77558 93 - 1
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAACGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40)
>DroEre_CAF1 79459 93 - 1
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGCGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40)
>DroYak_CAF1 76976 97 - 1
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCACCGGAGAGUUG---------------------GCUGGCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((.....((((((((.....)))))))).---------------------(((.((.--...((.((....))....)).....)).)))...)))))... ( -25.10)
>DroAna_CAF1 73938 120 - 1
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGUGGAGAGUCGAGCCGGAAUCUCCAUCUCCGAGCUGGCCGAAAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((...((((((((((.....))))))))))(((((...(((.......))))))))...........(...(((((.......))))).)...)))))... ( -33.40)
>consensus
UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGCGGAGAGUUG_________________________GCC__AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG
(((((......)))))(((((.....((((((((.....)))))))).......................................(...(((((.......))))).)...)))))... (-23.02 = -22.88 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:51 2006