Locus 2841

Sequence ID 2R_DroMel_CAF1
Location 9,835,638 – 9,835,757
Length 119
Max. P 0.821156
window4696

overview

Window 6

Location 9,835,638 – 9,835,757
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.71
Mean single sequence MFE -37.38
Consensus MFE -32.22
Energy contribution -32.96
Covariance contribution 0.74
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value 0.68
SVM RNA-class probability 0.821156
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9835638 119 - 20766785
GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA-AAAGG
..((.(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))-...)) ( -38.80)
>DroSec_CAF1 73037 119 - 1
GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA-AAAAG
.....(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))-..... ( -37.90)
>DroSim_CAF1 74886 119 - 1
GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA-AAAGG
..((.(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))-...)) ( -38.80)
>DroYak_CAF1 75503 119 - 1
GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGGCCUGGCCA-AAAGG
..((.(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((((((((............))))....)).)))))))-...)) ( -40.20)
>DroAna_CAF1 72719 105 - 1
GCCCGGCUUGGUAUGCGGCUAGAUUUAUGGCCUGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCGGCCAAGGAACGCAACG---------------AGGCCAAAAAGG
....(((((.((.((((((((......)))))........(((((..((.....))...............(((....))).)))))))))).---------------)))))....... ( -31.20)
>consensus
GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA_AAAGG
.....(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))...... (-32.22 = -32.96 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:49 2006