Locus 284

Sequence ID 2R_DroMel_CAF1
Location 1,692,653 – 1,692,773
Length 120
Max. P 0.543449
window595

overview

Window 5

Location 1,692,653 – 1,692,773
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -40.97
Consensus MFE -20.80
Energy contribution -22.33
Covariance contribution 1.53
Combinations/Pair 1.24
Mean z-score -1.98
Structure conservation index 0.51
SVM decision value 0.02
SVM RNA-class probability 0.543449
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1692653 120 - 20766785
AUCACCUUCUUCGCCGCCUGCAUGGCCAUUUCGGGAUACAGGGAGCGGAAGAAUUUGCAUUCCAUUUUCGGCUGCCGUGUCCAGCCAAUGUCUGUUGCAAUCAAAGGUGAGUAAACUGCU
.(((((((....((.((..(((((((.......((((((.((.(((.(((((............))))).))).)))))))).))).))))..)).)).....))))))).......... ( -38.40)
>DroVir_CAF1 4547 120 - 1
AUCACCUUCUUUGCCGCCUGCAUGGCUAUUUCGGGCUAUAGGGAACGGAAGAAUCUGCAUGCAAUAUUUGGAUGCAAAGUGAAGCCCAUGUCGGUGGCCAUUAAAGGUAAGUGAAGCAAU
.((((..(((((((((((.((((((((.(((((..((....))..))))).....(((((.((.....)).)))))......)).)))))).))))))....)))))...))))...... ( -40.40)
>DroGri_CAF1 3075 120 - 1
AUCACCUUCUUUGCCGCCUGCAUGGCCAUCUCGGGCUACAGGGAACGUAAGAAUCUUCAUGCCAUUUUCGGUUGCAAGGUGAAGCCGUUGUCGGUGGCGAUUAAGGGUAAGUCAAAGACU
....((((..((((((((.((((((((((((...((.((.(..((.(((.((....)).)))..))..).)).)).)))))..)))).))).))))))))..))))...((((...)))) ( -40.30)
>DroWil_CAF1 5867 120 - 1
AUUACUUUCUUUGCCGCAUGCAUGGCCAUAUCGGGCUACAGAGAGAGGAAGAAUUUGCAUGCGAUUUUCGGUUGUAAGGUGCAACCGAUGUCAGUGGCAAUUAAAGGUGAGUGAACCACA
....((((..(((((((((((((((((......))))).................)))))))(((..((((((((.....)))))))).)))...)))))..))))(((.(....)))). ( -43.72)
>DroMoj_CAF1 2723 120 - 1
AUCACUUUCUUUGCCGCCUGCAUGGCGAUAUCUGGGUACAGGGAACGUAGGAAUCUUCAUGCUAUCUUUGGUUGUAAAGUGAAGCCCAUGUCGGUGGCUAUAAAAGGUAAGUGGAGAUAU
.(((((((((((((((((.((((((((...((((....))))...))).((...((((((((((....))))......))))))))))))).))))))....))))).))))))...... ( -37.90)
>DroAna_CAF1 5343 120 - 1
AUCACCUUCUUCGCCGCCUGCAUGGCUAUCUCCGGAUACAGGGAGCGCCAGAAUUUGCAUUCCAUUUUCGGGUGUCGGGUCCAGCCGAUGUCGGUGGCCAUCAAAGGUGAGUGAACUGCC
.(((((((....((((((.((((((((....((.(((((..((((.((........)).))))........))))).))...)))).)))).)))))).....))))))).......... ( -45.10)
>consensus
AUCACCUUCUUUGCCGCCUGCAUGGCCAUAUCGGGCUACAGGGAACGGAAGAAUCUGCAUGCCAUUUUCGGUUGCAAGGUGAAGCCGAUGUCGGUGGCAAUUAAAGGUAAGUGAACCACU
...(((((....((((((.(((((((..((((........))))...........((((.(((......))))))).......))).)))).)))))).....)))))............ (-20.80 = -22.33 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:31 2006