Locus 283

Sequence ID 2R_DroMel_CAF1
Location 1,690,664 – 1,690,766
Length 102
Max. P 0.639770
window594

overview

Window 4

Location 1,690,664 – 1,690,766
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.37
Mean single sequence MFE -37.28
Consensus MFE -24.87
Energy contribution -24.40
Covariance contribution -0.47
Combinations/Pair 1.45
Mean z-score -1.62
Structure conservation index 0.67
SVM decision value 0.22
SVM RNA-class probability 0.639770
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1690664 102 + 20766785
AUGGGGCUCCCAGGAAGCCUUUCGAGCCAUAUGGGCCGUUGAUACCAAUGCUAGGGUAUUGCAUGUAAUAUGACUGUGAAAAGGGCUUUUCCAGCUGACGGU
....(((((..(((...)))...)))))......((((((((((((........)))))).............(((.(((((....))))))))..)))))) ( -27.70)
>DroPse_CAF1 108322 102 + 1
AAGGAGCUCCGAGGAAGCCCUUGGAGCCAUAGGGUCCAUUGAUGCCCAUGGUGGGGUACUGCAUAUAGUACGACUGGGAGAAGGGCUUCUCCGGCUUCCUCU
..((....))(((((((((......(((((.((((........)))))))))(..((((((....))))))..)..((((((....))))))))))))))). ( -44.30)
>DroEre_CAF1 81394 102 + 1
ACGGUGCUCCCAGGAAGCCUUUCGAGCCAUAUGGGCCGUUGAUGCCAAUGGUAGGGUAUUGCAUGUAAUAUGACUGCGAGAAGGGCUUUUCCAGCUGACGGU
.((..(((....(((((((((((..(((......(((((((....)))))))..))).(((((.((......))))))))))))))))))..)))...)).. ( -35.10)
>DroWil_CAF1 3520 102 + 1
AGGGGGCUCCGAGGAAUCCUUUAGAGCUAUACGGACCAUUGAUGCCCAUGGUGGGAUAUUGCAUAUAGUAGGAUUGUGUGAAUGGUUUCUCCAGCUUUGUUU
.((((((((..(((....)))..)))).....(((((((((((((((.....))).)))).((((((((...)))))))))))))))))))).......... ( -30.80)
>DroAna_CAF1 3413 102 + 1
AGGGGGCACCCAGGAAGCCCUUGGAGCCGUAGGGCCCGUUGAUGCCCAUGGUAGGAUACUGCAUGUAAUAGGAUUGCGAGAAGGGCUUCUCGAGCUGUCUCU
.(((((((.((..(((((((((...(((((.((((........)))))))))......(((((...........))).)))))))))))..).).))))))) ( -40.10)
>DroPer_CAF1 102198 102 + 1
AAGGAGCUCCGAGGAAGCCCUUGGAGCCAUAGGGUCCAUUGAUGCCCAUGGUGGGGUACUGCAUGUAGUACGACUGGGAGAAGGGCUUCUCCGGCUUCCUCU
..((....))(((((((((......(((((.((((........)))))))))(..((((((....))))))..)..((((((....))))))))))))))). ( -45.70)
>consensus
AAGGGGCUCCCAGGAAGCCCUUGGAGCCAUAGGGGCCAUUGAUGCCCAUGGUAGGGUACUGCAUGUAAUACGACUGCGAGAAGGGCUUCUCCAGCUGACUCU
.(((((((....((((((((((...(((((.(((..........))))))))...((((((....)))))).........))))))))))..)))).))).. (-24.87 = -24.40 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006