| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,825,073 – 9,825,189 |
| Length | 116 |
| Max. P | 0.691768 |
| Location | 9,825,073 – 9,825,189 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -36.50 |
| Consensus MFE | -27.93 |
| Energy contribution | -29.85 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9825073 116 + 20766785 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU-UGCGUCUUUUAUG ..((((((((.((((((((.((((((((.(((.---...((((.....))))..))).)))))))).)))))))).(((((.....)).))).........)))))-))).......... ( -37.50) >DroSec_CAF1 62792 117 + 1 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUUUUGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---...((((.....))))..))).)))))))).))))))))....(((((.(((............))).)))))))))))).... ( -37.60) >DroSim_CAF1 64343 117 + 1 GAGCAAAGACCGAGUUCAAUACACUCGACGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUUUUGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---...((((.....))))..))).)))))))).))))))))....(((((.(((............))).)))))))))))).... ( -38.40) >DroEre_CAF1 67605 116 + 1 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU-UGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---...((((.....))))..))).)))))))).))))))))....((((((...........))))))....-..))))))).... ( -35.80) >DroYak_CAF1 64717 116 + 1 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUGAGUGACGAACAUUUAGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU-UGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---.((((((.....))))))))).)))))))).))))))))....((((((...........))))))....-..))))))).... ( -37.40) >DroAna_CAF1 62828 110 + 1 GA---------GAGUUCAAUACACUCGCCGGCAGUGUUCAGUGACGAACAUUCGGCUCUUGUGUUUAUUGAACUCAUUUCAAAAUGCGUAAAUUUUGCUUUGUCUU-UGGGCCUUUUAUG ..---------(((((((((((((..(((((..((((((......)))))))))))....))))..)))))))))...........((((((....((((......-.))))..)))))) ( -32.30) >consensus GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA___UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU_UGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((....(((......)))......))).)))))))).))))))))....((((((...........)))))).......))))))).... (-27.93 = -29.85 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006