| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,823,589 – 9,823,683 |
| Length | 94 |
| Max. P | 0.644998 |
| Location | 9,823,589 – 9,823,683 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.82 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -18.92 |
| Energy contribution | -19.45 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9823589 94 - 20766785 C--------AAAAGGAAG---AAAAAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---........(((((....((((((((.((((((...((((............))))..))))))..))).....------))))).)))))--------- ( -21.60) >DroSec_CAF1 61323 94 - 1 C--------AAAAGGAAG---AAAAAAGAAGCAGAAGCAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---..............(((((((((((.((((((...((((............))))..))))))..))).....------))))))))...--------- ( -24.40) >DroSim_CAF1 62861 94 - 1 C--------AGAAGGAAG---AAAAAAGAAGCAGAAGCAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---..............(((((((((((.((((((...((((............))))..))))))..))).....------))))))))...--------- ( -24.40) >DroEre_CAF1 66044 94 - 1 C--------AGAAGGAAG---AAAGAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---........(((((....((((((((.((((((...((((............))))..))))))..))).....------))))).)))))--------- ( -21.60) >DroYak_CAF1 63140 94 - 1 C--------AGAAGGAAG---AAAGAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---........(((((....((((((((.((((((...((((............))))..))))))..))).....------))))).)))))--------- ( -21.60) >DroAna_CAF1 61293 120 - 1 CCAAUGAAGAAGAGGAAGCAGAAGCCAGAAGCCGAAGAAGGGGCAGAAGAUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAAAUCGUAUCCCCCUUUUUCAGGGGGAU ((..((((((((.(((.((...((((((..(((........)))......((((..((((............))))))))..)))))).((....)))).)))..))))))))..))... ( -35.20) >consensus C________AAAAGGAAG___AAAAAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA______UCCCUGCUGUU_________ .............................(((((....(((((......((((..(((.(((....((((....))))....))))))..))))......))))).)))))......... (-18.92 = -19.45 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:21 2006