Locus 2820

Sequence ID 2R_DroMel_CAF1
Location 9,818,397 – 9,818,506
Length 109
Max. P 0.952679
window4661

overview

Window 1

Location 9,818,397 – 9,818,506
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.02
Mean single sequence MFE -28.17
Consensus MFE -23.56
Energy contribution -23.67
Covariance contribution 0.11
Combinations/Pair 1.12
Mean z-score -2.81
Structure conservation index 0.84
SVM decision value 1.42
SVM RNA-class probability 0.952679
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9818397 109 + 20766785
UAUUCUUUAUAUUGUUUGCGGGGAAACAAGAACUGGAACAACAGCAGCAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU----
..........((((((((..(((..((.(((((.((((((((((.(((.((((.(........).)))).-------))).)))))))).))))))).))..)))..)))))))).---- ( -26.80)
>DroSec_CAF1 56213 109 + 1
UAUUCUUUAUAUUGUUUGUGUGGAAACAAGAACUGGAACAACAGCAGCAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU----
..........((((((((((((....)).((.(..((((...((((((((.(((...(((.....)))..-------))).))))))))...))))..)))....)))))))))).---- ( -27.00)
>DroSim_CAF1 57608 109 + 1
UAUUCUUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAGCAGCAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU----
..........(((((((((((((..((.(((((.((((((((((.(((.((((.(........).)))).-------))).)))))))).))))))).))..))))))))))))).---- ( -29.60)
>DroEre_CAF1 59710 106 + 1
UAUUCUUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAG---CAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU----
..........(((((((((((((..((.(((((.((((((((((---.(((.(((...........))).-------))).)))))))).))))))).))..))))))))))))).---- ( -29.40)
>DroYak_CAF1 58102 106 + 1
UAUUCCUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAG---CAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU----
..........(((((((((((((..((.(((((.((((((((((---.(((.(((...........))).-------))).)))))))).))))))).))..))))))))))))).---- ( -29.40)
>DroAna_CAF1 56700 113 + 1
UAUUCUUUAUAUUGUUUAUGGGGAAACAAGAACUGGAACAGCAACA-------CUGCCACUUUUUUUGUAGCUCUUCGUUUUUGUUGUUACCGUUUUGGUCACCUCACAAAUAGUUUGAG
......(((.(((((((.(((((..((.(((((.((((((((((.(-------(.((.((.......)).)).....))..)))))))).))))))).))..))))).))))))).))). ( -26.80)
>consensus
UAUUCUUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAGCA_CAACAACAUUCAACUUUAUUGUG_______GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU____
..........(((((((((((((..((.(((((.((((((((((.............(((.....))).............)))))))).))))))).))..)))))))))))))..... (-23.56 = -23.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:15 2006