| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,816,763 – 9,816,872 |
| Length | 109 |
| Max. P | 0.589075 |
| Location | 9,816,763 – 9,816,872 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9816763 109 - 20766785 CAAG--CAAUUACCAGGUGACGGGCCACGGACAAAUGGCAUGGAUAACUGCAGUAGCCACUGCCAAAUCGGCGCACAUUCAGAAAUUGGUCCGUUGCCAAAAGAAGUCCAA--- ....--.........((..((((((((......((((((.(.(((....(((((....)))))...))).).)).)))).......))))))))..)).............--- ( -33.22) >DroSec_CAF1 54600 109 - 1 CAAC--CAAUUACCAGGUGACGGGCCACGGACAAAUGGCAUGGAUAACUGCAGUAGCCACUGCCAAAUCAGCGCACAUUCAGCAAUUCGUCCGUUGCCAAAAGAAGUCCAA--- ..((--(........)))(((.(((.((((((...((((((((...((....))..))).))))).....((.........)).....)))))).))).......)))...--- ( -31.40) >DroSim_CAF1 56087 109 - 1 CAAC--CAAUUACCAGGUGACGGGCCACGGACAAAUGGCAUGGAUAAGUGCAGUAGCCACUGCCAAAUCAGCGCACAUUCAGCAAUUCGUCCGUUGCCAAAAGAAGUCCAA--- ..((--(........)))(((.(((.((((((.(((.((.(((((..(((((((....)))((.......))))))))))))).))).)))))).))).......)))...--- ( -31.30) >DroEre_CAF1 58106 109 - 1 CAAC--CAAUUACCAGUUGAUGGGCCAUGGACCAAUGGCAUUGAUAACUCCAGUAGCCACUGCCAAAUCGGCGCACAUUCAGAAACUAGUCCAUGACCAAAAGAAGUCCAG--- ((((--.........)))).(((..(((((((...((((((((.......)))).))))..(((.....)))................))))))).)))............--- ( -27.30) >DroWil_CAF1 69873 112 - 1 CUUU--CCAUCUUCAGGUUAUGGGCUAUGGACCAAUGGCCCGGGUGCUGGCUGUUUCUAAAGCGCAAACUGCUCACAUUCAGCAAUUUGUGCAAUGUCAAAAAAAACCAAGCAA ....--.........((((..(((((((......)))))))(((.((.....)).)))...(((((((.((((.......)))).)))))))............))))...... ( -30.20) >DroYak_CAF1 56497 111 - 1 CAACAUAAAUUACCAGGUGAUGGGCCACGGACCAAUGGCAUUGAUAACUGCAGUACCCACUGCCAAAUCGGCGCACAUUCAGAAACUAGUCAAUAGCCAAAAGAAGUCCAG--- ............(((.....))).....((((...((((((((((...((((((....)))(((.....))))))(.....)......)))))).))))......))))..--- ( -23.20) >consensus CAAC__CAAUUACCAGGUGACGGGCCACGGACAAAUGGCAUGGAUAACUGCAGUAGCCACUGCCAAAUCGGCGCACAUUCAGAAAUUAGUCCAUUGCCAAAAGAAGUCCAA___ ...............((..((((((........((((((.(.(((....(((((....)))))...))).).)).)))).........))))))..))................ (-17.62 = -17.93 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:13 2006