Locus 2818

Sequence ID 2R_DroMel_CAF1
Location 9,812,717 – 9,812,813
Length 96
Max. P 0.944151
window4659

overview

Window 9

Location 9,812,717 – 9,812,813
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.69
Mean single sequence MFE -24.42
Consensus MFE -17.62
Energy contribution -19.40
Covariance contribution 1.78
Combinations/Pair 1.32
Mean z-score -2.06
Structure conservation index 0.72
SVM decision value 1.34
SVM RNA-class probability 0.944151
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9812717 96 + 20766785
---UCAAACUCCAAAAUCCGCCCUUCUAAUAACCGACCUCUAUAGGUUGCCACCUCACUUUCGGAUGGGUCUUAUUUCGGUGAGAUCUGUCUGCUGACC
---.............((.((............((((((....)))))).............(((((((((((((....))))))))))))))).)).. ( -21.60)
>DroSec_CAF1 50529 99 + 1
CAGUCAAAAUCGAAAAUCCACCAUUCUAAUUACCAACUCUUACAGGUUGCCACCUCACUUUCGGAUGGGUCCUACUUCGGUGAGAUCUGUCUGCUGACC
..((((...........................(((((......)))))............((((((((((.(((....))).)))))))))).)))). ( -22.50)
>DroSim_CAF1 51052 99 + 1
CAGUCAAAAUCCAAAAUACGCCCUCCUAAUUACCAACUCUUACAGGUUGCCACCUCACUUUCGGAUGGGUCCUACUUCGGUGAGAUCUGUCUGCUGACC
..((((...........................(((((......)))))............((((((((((.(((....))).)))))))))).)))). ( -22.50)
>DroEre_CAF1 54091 92 + 1
CAGC-------CAAGAUCCCCCCGUCUAAUUACCAACUUUUACAGGUUGCCACCUCACUUUCGGAUGGGUCUUACUUCGGUGAGAUCUGUCUGCUGACC
((((-------..((((......))))......(((((......))))).............(((((((((((((....)))))))))))))))))... ( -28.10)
>DroWil_CAF1 64946 98 + 1
GAUUCCUUUAAGCAAAUUUA-CUUUGAAAUUUCUCUUUCCUUCAGGUGGCCACCUCGCUAUCGGAUGGCUCUUACUUUGGUGAGAUCUGUCUGCUGACC
..........(((.......-.......................((((((......))))))((((((.((((((....)))))).))))))))).... ( -22.20)
>DroYak_CAF1 52554 92 + 1
CAGC-------CAAGAUCCCCUGGUCUAAUUAACAAGUUUUUCAGGUUGCCACCUCACUUUCGGAUGGGUCUUACUUCGGUGAGAUCUGUCUGCUGACC
((((-------........(((((...((((....))))..)))))................(((((((((((((....)))))))))))))))))... ( -29.60)
>consensus
CAGUCAAA_UCCAAAAUCCACCCUUCUAAUUACCAACUCUUACAGGUUGCCACCUCACUUUCGGAUGGGUCUUACUUCGGUGAGAUCUGUCUGCUGACC
.................................(((((......))))).....(((....((((((((((((((....)))))))))))))).))).. (-17.62 = -19.40 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006