Locus 2816

Sequence ID 2R_DroMel_CAF1
Location 9,807,059 – 9,807,174
Length 115
Max. P 0.734448
window4656

overview

Window 6

Location 9,807,059 – 9,807,174
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.82
Mean single sequence MFE -31.63
Consensus MFE -25.90
Energy contribution -25.18
Covariance contribution -0.72
Combinations/Pair 1.18
Mean z-score -2.21
Structure conservation index 0.82
SVM decision value 0.43
SVM RNA-class probability 0.734448
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9807059 115 - 20766785
AGCUUGGCCAGGCGCAGGAUGCGCAGGGCGCGUCCGGCAUGCAAUAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUAAAUUAAAAUGUUGCGUA-CUGUUUCUUA----A
.((((....))))((.((((((((...)))))))).))(((((((((((...((((......(((((......)))))....))))......))))))))))).-..........----. ( -32.70)
>DroVir_CAF1 48712 118 - 1
AAUUUGGCUAGACGUAGGAUGCGCAGAGCGCGUCCGGCAUGCAAUAUUUGAAAAGAAUCAGAAAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAAAUGUUGCGUA-CUGUUUGUCAAACAA
..((((((.((((((.((((((((...)))))))).))(((((((((((((.((((....((((..........))))....)))).-.)).))))))))))).-..))))))))))... ( -35.30)
>DroPse_CAF1 43732 115 - 1
AGUUUAGCUAGGCGCAGGAUGCGCAGGGCGCGUCCGGCAUGCAAAAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAUGUGUUGCGUA-CUGCUUCUCA---AA
.(...(((...(((((((((((((...)))))))).((((......(((((......)))))(((((......))))).........-....))))..))))).-..)))...).---.. ( -31.50)
>DroWil_CAF1 55226 115 - 1
AAUUUAGCUAGGCGCAGGAUACGCAAAGCGCGUCCUGCAUGCAAGAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAAAUGUUGCGUAACUGUUUUAUA----A
((..(((.((.((((((((..(((...)))..)))))).((((.(((((.....))))).((....)).))))..............-...........)).)).)))..))...----. ( -28.90)
>DroMoj_CAF1 59318 115 - 1
AAUUUAGCUAGACGGAGGAUGCGCAAAGCGCGUCCGGCAUGCAAGAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAAAUGUUGCGUA-CUGUUUCUUU---AA
...((((..((((((.((((((((...))))))))...((((((.((((((.((((......(((((......)))))....)))).-.)).)))).)))))).-))))))..))---)) ( -29.90)
>DroPer_CAF1 43698 115 - 1
AGUUUAGCUAGGCGCAGGAUGCGCAGGGCGCGUCCGGCAUGCAAAAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAUGUGUUGCGUA-CUGCUUCUCA---AA
.(...(((...(((((((((((((...)))))))).((((......(((((......)))))(((((......))))).........-....))))..))))).-..)))...).---.. ( -31.50)
>consensus
AAUUUAGCUAGGCGCAGGAUGCGCAGAGCGCGUCCGGCAUGCAAAAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA_AUCAAAAUGUUGCGUA_CUGUUUCUCA___AA
.........((((((.((((((((...)))))))).))((((((.((((((.((((....((((..........))))....))))...)))).)).))))))....))))......... (-25.90 = -25.18 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:09 2006