Locus 2815

Sequence ID 2R_DroMel_CAF1
Location 9,806,588 – 9,806,691
Length 103
Max. P 0.602497
window4655

overview

Window 5

Location 9,806,588 – 9,806,691
Length 103
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 84.24
Mean single sequence MFE -18.25
Consensus MFE -13.47
Energy contribution -13.47
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 0.14
SVM RNA-class probability 0.602497
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9806588 103 + 20766785
CA---AU--GAUAUCUU--AUAUUUC-GAUACAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
..---.(--((......--(((((.(-(((.((((...((.(((((..(((((.((((.........)))))))))))))).)).))))...)))).)))))......))) ( -19.90)
>DroVir_CAF1 48284 107 + 1
UAUAUACCAUAUAUCGU--UGAUUUCGGA--CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
...............((--((.....((.--((((...((.(((((..(((((.((((.........)))))))))))))).)).)))))).....))))........... ( -19.30)
>DroGri_CAF1 53337 92 + 1
UAUAU-------AU---------UUU-GG--CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
.....-------..---------.((-((--((((...((.(((((..(((((.((((.........)))))))))))))).)).)))))))).................. ( -22.60)
>DroEre_CAF1 47760 88 + 1
CA--------------------UUUC-GA--CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
.(--------------------((.(-((--(.(((..((.(((((..(((((.((((.........)))))))))))))).))....))).)))).)))........... ( -17.50)
>DroMoj_CAF1 58834 99 + 1
CAUCU-------AUUGUUUUUAUUUU-----CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
....(-------(((((....(((..-----((((...((.(((((..(((((.((((.........)))))))))))))).)).))))..))).)))))).......... ( -16.40)
>DroAna_CAF1 45107 97 + 1
-----------UUUCUU--CACUUUU-CUUACAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
-----------......--.......-....((((...((.(((((..(((((.((((.........)))))))))))))).)).))))...................... ( -13.80)
>consensus
CA__________AUC_U____AUUUC_GA__CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA
...............................((((...((.(((((..(((((.((((.........)))))))))))))).)).))))...................... (-13.47 = -13.47 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:08 2006